Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01291 ATGGGTAATCAATATCGCTCAGGAAACTGGTTGAATGAAGACAACAACTCAGTTCGTGATGTCAGAGCTCTAAGATATCTATTGGCTAATAATTCTGCAAATAATTTTTCTTTTGTTGGTATCAATAATCACAATATTGTAAGAGGATCAAGAACCATAAGAGTTCAATCAATTCATGAACTTATCAATCTTCCCCAACTTCCTGGAAACACAAACACTACTGGTCATGATGGTGGTGTTGATCATCACTATCCTGCTCCTACTATATTACCAAGAACTACTACTATTAACAATTATAATGATAACCGTGCTTCTTCTTCTTCTTTCTCTTTCCTGCCTGCCAGACCTTTTGGATCAACTTTGACCACTATCAATAGAAATAACAACATATCATCATTATTAGGTTTATCATCCATGTTATATCCAAATATTGGAGGACAACCTGCAAGACCTGCTGCTCTATATAATAACAGTCGAACTGGTGGAGCTGTAGGAAACAATAGCAATATTAGTAATCCTATTTTGAATAATGGTAGAATTAACAATAATGTTGCCACTACTACTGCTGGTCCTATTAGGAATGATGACCTTGGGCGCTCTTTGTCCTTAAAGAGAAGTAGATCACCTGATCAATTCTTGAGAGGCGATAGTTCTGGTCAAGGTTCACAAGATGCTGGAACCTCTAGCAGAAGACGGATAATTCCTCCTATTTGTTTTCATCAAGATAATCACAACGTGTCTTCTTCAACTTCATCAACATCGCAGAGGCACTATAGCGGTAATAGTGTCATTTCTAATATGTTGAACCAAAACATGGTGAACCAAGCTATTGTTGATGGTGCAGGACCAAGTAGTACTAGCATGACTCAGTCTCACATTAATAGTCTTCTAGAAAGTCATGGCCAAGCAGGTATTGCTGGTAACCTACCATATCAGTCTAATTCTACTAATGAGCCAATGGATATTAATCGTTTTTTGTTCCCACCTCGACAAGACCATCCTCCGAATAACTTCATCAATAGAAGATATGACCCTTCAGCTGCCTTTGCATCAACAAGAGGATCATTGGTAACAACTCAAGCTGCCACACCCTTTCAAATATACAACAATTTTATGCCTCTTACAATTGCTGGTAGTGGTTCTTCTTTTCGAAGCACGGGTTCAAGACAAAATCATAGTAATAATAACAACTTTGATTTCTTTGAAAGTTTTCATCGCGAAATTGATGATGTATTTGGTCATAGTACAATAAGTATTCAAGAACATGCAAGGGTATTGCCAATTGGTCGTGTGTATCGGTCTTTAGTTCAAACTTTTGTTCCTGTGCAGCCTAGTAGTTCTGTACCATCACAACCACCATTGTTGATTTCTGATCCTTCAATGAGCAATTACCGGCTAAACCCTCTTCCTGGACAAGGGTTTAGTACTACTTTAGAAGCTAATCGATATGTGCAGACCAATTCGACATTAACATCGACAAGATCAGAGAATCGAGTTCGTCTTGGCGGTCATAACCACATTTTTGCTTCAAATTTTCCTGAACTTATGGCAGAGCCAGAGAGGAACAGACGCAGGGGTGAGTTGGCGGCTCGCTCTAGAAGGGTCAATGTGAGACTGACGGAAGAACAAATCCTCACATTCATTCAACAAGAAACGTTTCAAACAAGTCATGGAGAGACCAACACAGAGAATCAAATCTGCACCATATGTCAGGAAGATTATGTGGATGGACAACGAATAGGACGAATAAACTGTAGGCACATATATCACCTTGACTGTATCAAGCAATGGCTGATGCATAAGAATATATGTCCAATATGCCAGCATAAAGCTCTGGAGATTGGTCATGGAGATGAGGATGCAAATCAAGGATAA 1875 0.3899 MGNQYRSGNWLNEDNNSVRDVRALRYLLANNSANNFSFVGINNHNIVRGSRTIRVQSIHELINLPQLPGNTNTTGHDGGVDHHYPAPTILPRTTTINNYNDNRASSSSFSFLPARPFGSTLTTINRNNNISSLLGLSSMLYPNIGGQPARPAALYNNSRTGGAVGNNSNISNPILNNGRINNNVATTTAGPIRNDDLGRSLSLKRSRSPDQFLRGDSSGQGSQDAGTSSRRRIIPPICFHQDNHNVSSSTSSTSQRHYSGNSVISNMLNQNMVNQAIVDGAGPSSTSMTQSHINSLLESHGQAGIAGNLPYQSNSTNEPMDINRFLFPPRQDHPPNNFINRRYDPSAAFASTRGSLVTTQAATPFQIYNNFMPLTIAGSGSSFRSTGSRQNHSNNNNFDFFESFHREIDDVFGHSTISIQEHARVLPIGRVYRSLVQTFVPVQPSSSVPSQPPLLISDPSMSNYRLNPLPGQGFSTTLEANRYVQTNSTLTSTRSENRVRLGGHNHIFASNFPELMAEPERNRRRGELAARSRRVNVRLTEEQILTFIQQETFQTSHGETNTENQICTICQEDYVDGQRIGRINCRHIYHLDCIKQWLMHKNICPICQHKALEIGHGDEDANQG 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01291 624 MobiDBLite consensus disorder prediction 204 229 - -
Trre15g01291 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 528 612 IPR013083 -
Trre15g01291 624 SMART ring_2 567 607 IPR001841 -
Trre15g01291 624 MobiDBLite consensus disorder prediction 186 229 - -
Trre15g01291 624 SUPERFAMILY RING/U-box 549 612 - -
Trre15g01291 624 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 106 612 IPR045191 GO:0061630
Trre15g01291 624 ProSiteProfiles Zinc finger RING-type profile. 567 608 IPR001841 -
Trre15g01291 624 Pfam Ring finger domain 566 608 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01291 Trre-Chr15 9985502 9988748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01291 528 613 C3H Transcription Factor Family AT2G15530 42.697 3.40e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01291 - - tpra:123896003 589.341