Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01289 ATGGCTTTGAAAGTGGCAAGTGGAAGTAGTAAAAGTAAAACCGAAAGAAACATTCCAACCACATGCATTTATTGGCTCGCCGGAAGATGTAACAGGAATCCTTGTAGATTTCTGCACAGCCAAACACCATCATCTTGTAATGCCGCGGCGAACGCTGGATATAATTCAAGAAAGCGTCATAATGAAACAACATCTTATAATGCAAAGAAGCAACATTCATCCTATGTTTATCAGAAGTCCTTTCCCAAACATAATGCTAAGACGGTCGTGAATAAAATGATCGGAGATGACAAAGACAGGACACAACTCGTTGAGGCTCCCCTTTCGAAACATAATACTGAGACGGATAAGACTGTTGATGACAGAGACAATGCACAAGTTGCTGAGGTTTCTCAAAATCCTTCACCAAGTATCTGCAAATATTGGGTGAATGACAGCTGTGTTCATGGTGATCAGTGCCGAAATTTACATTCGTGGTTTTACGGTGATGGGTTTGCAACAATAGCAAAGCTTCAAGGACACAAGAAGCTTATCACTGGAATGGCAATTCCTAAAGGATCAGACAAACTTTATACCGGCAGCACTGATGGGACAGTTCGGACATGGGACTGCCAGACTGGGAAATGTGTTAATGTGGCAAATCTTGGCAGTGAAGTTACCTCTTTGATCAGCGAGGGCCCGTGGATTTTTGTTGGTCTGCTAAACACTGTCATGGCATATAATATTCAGACTGCTTCACAGTATACTCTTGATGAACCTAACGGGCAAGTCCGTGCCATGACTGTTGGCAATGATACACTTTTAGCTGGAGCAGAGAATGGTGTAATTTCTGCATGGAGAGGCAGCTCTGAAGCCGATTCACCTTTTAAACTTGTTGCATCACTGCAAGGCCACACTAAATCTGTTGTATGCCTTGCCATTGGAACGCTCACGAAACTGTATTCGGGATCCGAGGACCAAAGCATTAAGGTTTGGGACCTTAACACATTTGAGTGTAAGATGACACTCAATGCACATATAGATACAGTCACATCTCTTATTTGTTGGAAAAGCTTCTTGTTATCCGGTTCATCTGATTGTACCATTAAGGCCTGGTTTCAAACCGAAGAGGGGAATTTGGAAGTGATATATTCACACAATGTGGAAAATGGTGTTGTTGCACTTTCTGGCATGGCCGATCCAGATAGTAAGCCTATATTATTATGTTCTACCAGAGACAATTCGGTTCACCTCTATGAACTGCCATCATTTGTCGAGAGGGGTAGATTGTTTGCAAAGCAAGAAATTGGATTAGTTGATGCAGCTGCCGGTGGACTCTTTTTCTCTGGAGACAGAACTGGATTACTGACAGTTTGGAAATGGTTGGGAGAGTACAAGGATGTAGAACCTCTCGAGTCATGA 1401 0.4268 MALKVASGSSKSKTERNIPTTCIYWLAGRCNRNPCRFLHSQTPSSCNAAANAGYNSRKRHNETTSYNAKKQHSSYVYQKSFPKHNAKTVVNKMIGDDKDRTQLVEAPLSKHNTETDKTVDDRDNAQVAEVSQNPSPSICKYWVNDSCVHGDQCRNLHSWFYGDGFATIAKLQGHKKLITGMAIPKGSDKLYTGSTDGTVRTWDCQTGKCVNVANLGSEVTSLISEGPWIFVGLLNTVMAYNIQTASQYTLDEPNGQVRAMTVGNDTLLAGAENGVISAWRGSSEADSPFKLVASLQGHTKSVVCLAIGTLTKLYSGSEDQSIKVWDLNTFECKMTLNAHIDTVTSLICWKSFLLSGSSDCTIKAWFQTEEGNLEVIYSHNVENGVVALSGMADPDSKPILLCSTRDNSVHLYELPSFVERGRLFAKQEIGLVDAAAGGLFFSGDRTGLLTVWKWLGEYKDVEPLES 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01289 466 PANTHER - 12 460 IPR044715 -
Trre15g01289 466 SUPERFAMILY WD40 repeat-like 142 453 IPR036322 GO:0005515
Trre15g01289 466 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Trre15g01289 466 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Trre15g01289 466 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Trre15g01289 466 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 203 - -
Trre15g01289 466 ProSiteProfiles Zinc finger C3H1-type profile. 16 42 IPR000571 GO:0046872
Trre15g01289 466 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 329 - -
Trre15g01289 466 ProSiteProfiles Zinc finger C3H1-type profile. 133 160 IPR000571 GO:0046872
Trre15g01289 466 SMART c3hfinal6 133 159 IPR000571 GO:0046872
Trre15g01289 466 SMART c3hfinal6 16 41 IPR000571 GO:0046872
Trre15g01289 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 212 IPR001680 GO:0005515
Trre15g01289 466 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 335 IPR001680 GO:0005515
Trre15g01289 466 Pfam WD domain, G-beta repeat 168 203 IPR001680 GO:0005515
Trre15g01289 466 Pfam WD domain, G-beta repeat 331 365 IPR001680 GO:0005515
Trre15g01289 466 Pfam WD domain, G-beta repeat 290 326 IPR001680 GO:0005515
Trre15g01289 466 Gene3D - 147 287 IPR015943 GO:0005515
Trre15g01289 466 Gene3D - 288 466 IPR015943 GO:0005515
Trre15g01289 466 ProSitePatterns Trp-Asp (WD) repeats signature. 313 327 IPR019775 -
Trre15g01289 466 SMART WD40_4 164 203 IPR001680 GO:0005515
Trre15g01289 466 SMART WD40_4 372 413 IPR001680 GO:0005515
Trre15g01289 466 SMART WD40_4 329 366 IPR001680 GO:0005515
Trre15g01289 466 SMART WD40_4 243 280 IPR001680 GO:0005515
Trre15g01289 466 SMART WD40_4 288 326 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01289 Trre-Chr15 9980091 9982218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01289 159 330 Eukaryotic Initiation Factors Gene Family AT2G46290 24.479 3.48e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g01289 WD40 0.00016 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01289 - - mtr:25500966 580.482