Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01285 ATGGAGTTTGACAAGCCCCAGTACGCGCAACTGAGGAAGTACACCGGTCCAGTAGCCAATGTCAAAGTGTTGGTTGTGGATGCTAACTCAGCATGCCGAGCAGTTATATCAAAATCGCTTCTTTCACTTGGATATGAGGTTGCAACTGCTACACTAGCTTCCGAGGCTTTATCCGTTATCGGGGAGAAGAAGAATGAGATAAACGTTGTGCTTGTGGAGGCTCAGTTGCCTGACATGGAAGTATATGAGCTAATAGATAAAATGAAAAGCTCCAGTATTCCATCTTTCATTACAACTGCTTATGATGATGACATTCCATCTATAACCAAAGCACTGCATACAGGAGCTATATGGTGTTTCAGAAAACCAGTTCAGATTTCTGATCTACAGCAGCTGTGGCGATTCGCAGTATGGAACCGGTATGAACCAACATTAAGCGAAGAAGTGCTTGATTATTGGTGGCCTCTGTCTGAAGTGGTTACGAATGGTCTTGAATGGCAACCATCCTTGAATACCAGAGAACAGTCTGTCGAAAGTGTAAATGGTAAAGCACAAGAATCTTTTGATAAAGAGACTACAGTACTCCTGAAAACGAAAAGGCGTACCTGGACCGATGATATAAATAGGAAGTTCTTGGATGCTGTTCAAACAGCAGGAATAGACGCTCCGCTTAAGACAATATTTGAGCTTATGGATGTGGAAGGACTTAAAAAAGACCATGTTTCAAAGTATTTACAGAAATATCGTCAATCTATGAATCTACATGCTAATCCAATGGAACAGCATGTGAATGGACAAGGTGTTACCAAAAATCCAGCTTTCAATCAGAAGGATCTTAACATGTCCGATCCATTTTTTCCTGCACTTCCTATTTCTCGACTACCTCCAGAGGAAAATGTAAAGATCAATGAAGTTTTTAATGCAAAAGAAAGTCAGATGTTTACCGACGATGATTTGAAAATGTGGTTGTCGACAATTCCAGGTACATTTTCTTCTTGTTCCTATTATTAG 1011 0.4045 MEFDKPQYAQLRKYTGPVANVKVLVVDANSACRAVISKSLLSLGYEVATATLASEALSVIGEKKNEINVVLVEAQLPDMEVYELIDKMKSSSIPSFITTAYDDDIPSITKALHTGAIWCFRKPVQISDLQQLWRFAVWNRYEPTLSEEVLDYWWPLSEVVTNGLEWQPSLNTREQSVESVNGKAQESFDKETTVLLKTKRRTWTDDINRKFLDAVQTAGIDAPLKTIFELMDVEGLKKDHVSKYLQKYRQSMNLHANPMEQHVNGQGVTKNPAFNQKDLNMSDPFFPALPISRLPPEENVKINEVFNAKESQMFTDDDLKMWLSTIPGTFSSCSYY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01285 336 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 266 IPR045279 GO:0009736
Trre15g01285 336 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Trre15g01285 336 SUPERFAMILY CheY-like 20 138 IPR011006 -
Trre15g01285 336 SUPERFAMILY Homeodomain-like 196 252 IPR009057 -
Trre15g01285 336 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Trre15g01285 336 Gene3D - 20 147 - -
Trre15g01285 336 Gene3D - 198 253 - -
Trre15g01285 336 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 250 IPR006447 GO:0003677
Trre15g01285 336 SMART REC_2 21 133 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01285 Trre-Chr15 9955610 9960151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01285 17 249 Response Regulator Gene Family AT2G25180 25.806 4.24e-21 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre15g01285 Response_reg 2.8e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01285 - K14491 tpra:123900016 456.447