Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01281 ATGGGTGCAGGTGGCAATTTGGTTAGTACAATAATTGGATTTGGAATGAGTGCAACTTTCATTGTATTTGTATGTGCAAGAATAATTTGTGGAAGATTTAGAGAAAGGCATGTAATAAGATCACGTACTATATATGAGATTGAATCAAGACCAGATATTGAACGGCCAGAATATCATGCTAATGAACCTGAACCTGCATTTGTTGCTGCAATCCCCACTTTAAATTTCAATCAAGAAGCCTTCAGTGCCATCCAATGTACACAGTGTGTGATATGTTTAGGAGATTATAAAGAAAAAGAAGTATTGCGCATAATACCTTATTGTGGACACACTTTTCATCTTTCTTGCATTGATATGTGGCTAAGAAAACAATCTACATGTCCTGTATGTCGTTTGACATTGCACAATGTTTGTGAAGAAAAACATGTGAGACCTGTGACATTCACCATAATACAATCTCTCAATGAGTCTAATACTCCACAAGGGAACAATGCTAATGAGACACAAGTTGAAGATAATGCAATAGAAACAGAATCAGGGTTAGAGAGGTTATAA 555 0.3586 MGAGGNLVSTIIGFGMSATFIVFVCARIICGRFRERHVIRSRTIYEIESRPDIERPEYHANEPEPAFVAAIPTLNFNQEAFSAIQCTQCVICLGDYKEKEVLRIIPYCGHTFHLSCIDMWLRKQSTCPVCRLTLHNVCEEKHVRPVTFTIIQSLNESNTPQGNNANETQVEDNAIETESGLERL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01281 184 MobiDBLite consensus disorder prediction 157 184 - -
Trre15g01281 184 CDD RING-H2_EL5-like 88 131 - -
Trre15g01281 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 137 IPR013083 -
Trre15g01281 184 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Trre15g01281 184 SUPERFAMILY RING/U-box 88 137 - -
Trre15g01281 184 PANTHER OS11G0150450 PROTEIN 2 171 - -
Trre15g01281 184 MobiDBLite consensus disorder prediction 157 175 - -
Trre15g01281 184 Pfam Ring finger domain 88 131 IPR001841 -
Trre15g01281 184 SMART ring_2 89 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01281 Trre-Chr15 9899665 9901643 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01281 78 134 C3H Transcription Factor Family AT4G10160 54.386 7.99e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01281 - - tpra:123899950 357.066