Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01280 ATGATGGGTGCAGGTGGCAATTTGGTTAGTACAATAATTGGATTTGGAATGAGTGCAACTTTCATTGTATTTGTATGTGCAAGAATAATTTGTGGAAGATTTAGAGAAAGGCATGTAATAAGATCACGTACTATATATGAGATTGAATCAAGACCAGATATTGAACGGCCAGAATATCATGCTAATGAACCTGAACCTGCATTTGTTGCTGCAATCCCCACTTTAAATTTCAATCAAGAAGCCTTCAGTGCCATCCAATGTACACAGTGTGTGATATGTTTAGGAGATTATAAAGAAAAAGAAGTATTGCGCATAATACCTTATTGTGGACACACTTTTCATCTTTCTTGCATTGATATGTGGCTAAGAAAACAATCTACATGTCCTGTATGTCGTTTGACATTGCACAATGTTTGTGAAGAAAAACATGTGAGACCTGTGACATTCACCATAATACAATCTCTCAATGAGTCTAATACTCCACAAGGGAACAATGCTAATGAGACACAAGTTGAAGATAATGCAATAGAAACAGAATCAGGGTTAGAGAGGTTATAA 558 0.3584 MMGAGGNLVSTIIGFGMSATFIVFVCARIICGRFRERHVIRSRTIYEIESRPDIERPEYHANEPEPAFVAAIPTLNFNQEAFSAIQCTQCVICLGDYKEKEVLRIIPYCGHTFHLSCIDMWLRKQSTCPVCRLTLHNVCEEKHVRPVTFTIIQSLNESNTPQGNNANETQVEDNAIETESGLERL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01280 185 Pfam Ring finger domain 89 132 IPR001841 -
Trre15g01280 185 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Trre15g01280 185 MobiDBLite consensus disorder prediction 158 185 - -
Trre15g01280 185 CDD RING-H2_EL5-like 89 132 - -
Trre15g01280 185 SUPERFAMILY RING/U-box 89 138 - -
Trre15g01280 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 138 IPR013083 -
Trre15g01280 185 SMART ring_2 90 131 IPR001841 -
Trre15g01280 185 MobiDBLite consensus disorder prediction 158 176 - -
Trre15g01280 185 PANTHER OS11G0150450 PROTEIN 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01280 Trre-Chr15 9899662 9901643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01280 79 135 C3H Transcription Factor Family AT4G10160 54.386 8.12e-19 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01280 - - tpra:123899950 358.992