Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01278 ATGGCAGGAGCTGAGTCTACTAAATATGCTTCTGCAACAAACAACATAACCAAATCAAAAAAACAAAACATGAGAAGATTCATTGGTGTGAGACAAAGGCCATCAGGTAGATGGGTGGCTGAGATAAAAGATTCATCTCAACATGTAAGATTATGGCTTGGAACATATGACACACCAGAAGAAGCAGCTCGAGCTTACGATGAAGCGGCTCGAGCTTTACGCGGAGAGAATGCTCGAACCAACTTCGCCGTAGCCGCAACAACAACAGACAGTACCACACCATGTAGTGATGATCAAGGACTAATATCATCATTACCAATATCAAATGAAGGAAAAAATAACAGTTTAACTTTTGCTTCATTGAAAGCAAAATTAAGCAAGAATCTTCAAAGTATTATGGCAAGAACAAGTGATCATAGCAATAACAAATTTTCAAAGAGTAGAGTGAGTGATCATTTTACTTTTGCTAGCATATTCAACCGTAGGAACAATTATAATCAAATTTCTGCTTTAGATATGAAGAACATTGAAAAAGTGGTGCAGCCTAGCATTATTGTTCCTTCTAATATTGAACCTTGTAGTGTTTCTGATTGTAGTTCTGAATGGTTTGGATTTCAGAATCATGGTTTAGACTCTGATGGATCTGATATAGTAGAGAACAATAATAATGTTAATATTAATGTTGGTGATCAAGGTTTTTTGGATCAACTTATGGGGTGGATTGATGATGATACTTCTGATATTTGTGAAGGTTCAAGTAGTAAAAGGTTTAAGGTATCTTCTTCTGTTCTTGTGCCACCAACTTTCTCTAGTTCTCCTTATGATTGTGGTTCACCTTATAGTGGTTATGCTTCTCCATATAATAGTTGTGGATCACCTTGTAATGGTTATGCCTCTCCTTATTATGGTAGCAAGAAGTAA 921 0.3626 MAGAESTKYASATNNITKSKKQNMRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAVAATTTDSTTPCSDDQGLISSLPISNEGKNNSLTFASLKAKLSKNLQSIMARTSDHSNNKFSKSRVSDHFTFASIFNRRNNYNQISALDMKNIEKVVQPSIIVPSNIEPCSVSDCSSEWFGFQNHGLDSDGSDIVENNNNVNINVGDQGFLDQLMGWIDDDTSDICEGSSSKRFKVSSSVLVPPTFSSSPYDCGSPYSGYASPYNSCGSPCNGYASPYYGSKK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01278 306 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Trre15g01278 306 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Trre15g01278 306 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Trre15g01278 306 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Trre15g01278 306 MobiDBLite consensus disorder prediction 7 22 - -
Trre15g01278 306 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Trre15g01278 306 MobiDBLite consensus disorder prediction 1 23 - -
Trre15g01278 306 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Trre15g01278 306 SUPERFAMILY DNA-binding domain 27 84 IPR016177 GO:0003677
Trre15g01278 306 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Trre15g01278 306 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Trre15g01278 306 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01278 Trre-Chr15 9878874 9879794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01278 17 83 AP2-EREBP Transcription Factor Family AT5G19790 70.588 5.08e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g01278 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01278 K09286 - mtr:25500954 494.197