Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01276 ATGTTTCAACATATGAACCATGATGATTTCGCAAATGTGGCAGGTTTTGCTTTTATCTACATGGAAGACGAACGTGATGCTGAGTATGCAATCAGACGACTTGATCAGACTGAATTTGGTAGAAAGGGTCGCCGAATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAACAGAAGGTCTGGTGGTGATTCAAAGAAATCTTCAACTAATACAAGACCATCGAAGACTTTGTTTATTATAAATTTTGATCCAGTTCACACCAGGACAAGGGATTTAGAGAGACACTTTGACCCCTATGGGAAAATTTCAAATTTAAGGATCAGAAGGAATTTTGCTTTTATCCAGTTTGAAACCCAGGAGGAAGCCACAAAAGCATTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGTGTTATAACAGTGGAGTATGCTATAAGAGATGACGATGTCAGAAAGGATGGATACAGTCCTGATAGAAGAGGTCGTGGCTCCCCTGATGGGAGATATGGTCGTGGGAGATCCCCAAGTCCTTATCGTAGAGGTAGGGGTAGCCCGGATTATGGTCGTGGATCAAATCCAGTTTCCAGACCAGAACCAAGAGGAAGTCCCAAGTATGAACGAGCTGAAAGCCCAGTTAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTAGATCAAGTCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATGAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTGATAGGTCACGGTCACGATCCTAA 801 0.4482 MFQHMNHDDFANVAGFAFIYMEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKQERDNRRSGGDSKKSSTNTRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVRKDGYSPDRRGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPVSRPEPRGSPKYERAESPVNGRYDSRSPPPRRSSPASRPEPRGSPKYERAESPMNGRYDSRSPPPRDRSRSRS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01276 266 SUPERFAMILY RNA-binding domain, RBD 14 148 IPR035979 GO:0003676
Trre15g01276 266 Gene3D - 11 65 IPR012677 -
Trre15g01276 266 Gene3D - 66 195 IPR012677 -
Trre15g01276 266 SMART rrm1_1 76 142 IPR000504 GO:0003723
Trre15g01276 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 53 IPR000504 GO:0003723
Trre15g01276 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 146 IPR000504 GO:0003723
Trre15g01276 266 MobiDBLite consensus disorder prediction 150 167 - -
Trre15g01276 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 139 IPR000504 GO:0003723
Trre15g01276 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 42 IPR000504 GO:0003723
Trre15g01276 266 MobiDBLite consensus disorder prediction 50 73 - -
Trre15g01276 266 MobiDBLite consensus disorder prediction 150 266 - -
Trre15g01276 266 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 16 90 - -
Trre15g01276 266 MobiDBLite consensus disorder prediction 50 65 - -
Trre15g01276 266 MobiDBLite consensus disorder prediction 235 266 - -
Trre15g01276 266 FunFam Serine/arginine-rich splicing factor RS31 67 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01276 Trre-Chr15 9873021 9874667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01276 15 149 Eukaryotic Initiation Factors Gene Family AT1G49760 27.083 1.61e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01276 K12893 - gmx:100797778 329.717