Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01275 ATGAAGCCCATCTTTTGCGGAAACCTGGATTTCGATGCAAGACAGTCTGATGTTGAGAGGCTTTTCAGAAAATACGGGAAGATTGATAGAGTGGACTTGAAGTCTGGTTTTGCTTTTATCTACATGGAAGACGAACGTGATGCTGAGTATGCAATCAGACGACTTGATCAGACTGAATTTGGTAGAAAGGGTCGCCGAATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAACAGAAGGTCTGGTGGTGATTCAAAGAAATCTTCAACTAATACAAGACCATCGAAGACTTTGTTTATTATAAATTTTGATCCAGTTCACACCAGGACAAGGGATTTAGAGAGACACTTTGACCCCTATGGGAAAATTTCAAATTTAAGGATCAGAAGGAATTTTGCTTTTATCCAGTTTGAAACCCAGGAGGAAGCCACAAAAGCATTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGTGTTATAACAGTGGAGTATGCTATAAGAGATGACGATGTCAGAAAGGATGGATACAGTCCTGATAGAAGAGGTCGTGGCTCCCCTGATGGGAGATATGGTCGTGGGAGATCCCCAAGTCCTTATCGTAGAGGTAGGGGTAGCCCGGATTATGGTCGTGGATCAAATCCAGTTTCCAGACCAGAACCAAGAGGAAGTCCCAAGTATGAACGAGCTGAAAGCCCAGTTAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTAGATCAAGTCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATGAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTGATAGGTCACGGTCACGATCCTAA 864 0.4502 MKPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKQERDNRRSGGDSKKSSTNTRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVRKDGYSPDRRGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPVSRPEPRGSPKYERAESPVNGRYDSRSPPPRRSSPASRPEPRGSPKYERAESPMNGRYDSRSPPPRDRSRSRS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01275 287 MobiDBLite consensus disorder prediction 171 188 - -
Trre15g01275 287 MobiDBLite consensus disorder prediction 71 86 - -
Trre15g01275 287 SUPERFAMILY RNA-binding domain, RBD 4 169 IPR035979 GO:0003676
Trre15g01275 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Trre15g01275 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Trre15g01275 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Trre15g01275 287 MobiDBLite consensus disorder prediction 171 287 - -
Trre15g01275 287 Gene3D - 78 216 IPR012677 -
Trre15g01275 287 SMART rrm1_1 97 163 IPR000504 GO:0003723
Trre15g01275 287 SMART rrm1_1 3 70 IPR000504 GO:0003723
Trre15g01275 287 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 97 280 - -
Trre15g01275 287 MobiDBLite consensus disorder prediction 71 92 - -
Trre15g01275 287 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Trre15g01275 287 MobiDBLite consensus disorder prediction 256 287 - -
Trre15g01275 287 FunFam Serine/arginine-rich splicing factor RS31 88 178 - -
Trre15g01275 287 Gene3D - 2 77 IPR012677 -
Trre15g01275 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01275 Trre-Chr15 9873021 9876426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01275 4 170 Eukaryotic Initiation Factors Gene Family AT1G49760 23.497 4.20e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01275 K12893 - gmx:100797778 397.512