Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01273 ATGGTGGAAGAAGGTAAAGTTGCTGTTGCAGTTGATACATGTTCAACAGAAGAATGGTTGTTGAACTCACAAGAACTTGTTCCTATTGCTCTTACAAAAGCAAAAGAGGCTGTGTCAAAGACACTGAGAGAATCCATTGAATTAGCTGAGTTATGTTTGAAGGAAAAGTATGAAGGTAAACTAAGAATGCAAAGTGATCTTGATGCATTAATTGGAAAACTTGATTTGAATTTAAAGGATTGTAGCTTGTTAACGAAAACCGGTGTACTTGGTGAAGCTACTTTGCAATTCAATGTTTCTGGTTTTTTAGCAGAATCAGATATTGAAACACATGGAAATATAAAGGAACTACTTGCGCGGCTTCAAATCGGTCATTTGGAATCGAAACACAAAGCTTTGGATAGATTGCATGATATTATGAGAGAAGATGAGAAGAATGTTTTGGCTGCTTTTTGTAGGAGCAATGTTGCTGCTTTGGTTCAATTGCTTACAGCAACATCAACAAGGATTAGGGAGAAAACTGTTAGTATTATATGTTCTCTTGTTGAATCGGGTGGTAGCTGCGAAAACTGGTTAGTTTCTGAAGGTGTTTTGCCACCTCTTATAAGGCTTGTTGAGTCAGGTAGTACTTTTGGTAAAGAAAAGGCTATTGTTTCTCTTCAGAGGTTGTCGATGTCAGAAGAAACAACTCGTGCGATTGTTGGACACGGAGGGGTTCCTCCGTTAGTCGAGCTTTGTCAGGTTGGTGATTCTGTTTCACAATCTGCAGCAGCTTGCACTTTGAAGAACATTTCGGCTGTTCCGGAAGTGAGAAATGTTTTGGCTGAAGAAGGTGTTGTTAAGGTTATGATCAATCTACTCAGCAATGGAATTTTGTTAGGTACTAAAGAGTATGCTGCTGAGTGTCTCCAGAATCTCACTGCAAGCAATGAGAGTCTAAGAAAATTGGTTATATCAGAAGGCGGCGTTCGGAGTCTTTTGGTTTATCTTGATGGTCCACTTCCCCAAGAATCTGCAGTTGGTGCATTGAGGAATCTCGTCGGATCGGTTCCCGAGGAAACATTGGTTTCTCTTGGATTGCTTCCTTGTTTAGTTCATGTGTTGAAGTCAGGATCCTTAGGCGCGAAACAAGGCGCTGCGTCGGTTCTATGCAAAGTTTGCAGCACAATTGAGATGAAGAAAATGTTAGGTGAAGTTGGTTGCATACCTCTATTGATCAACATGCTTGAAGCTAAAGCAAACAATGCTAGGGAACTTGCAGCACAAGCAATTGCAAGCTTAATGATTCTGTCTGAGAATCGAAGAGAAGTTAAGAAAGATGATAAAAGTGTGCCGAATTTGGTTCAATTGCTTGATCCAAGTCCACAAAATACTGCAAAGAAATATGCAGTTTGTTGTCTTGCATCACTTTCTTCATGTAAGAAATGTAAGAAGTTGATGATTTCATATGGAGCAATAGGGTATTTGAAGAAGCTTATTGAAATGGAGATTCCAGGAGCTAAAAAGTTGCTTGAGAGATTGGAAAGAGGGAAATTGAGAAGCTTGTTTAGCAGAAAATAG 1560 0.3949 MVEEGKVAVAVDTCSTEEWLLNSQELVPIALTKAKEAVSKTLRESIELAELCLKEKYEGKLRMQSDLDALIGKLDLNLKDCSLLTKTGVLGEATLQFNVSGFLAESDIETHGNIKELLARLQIGHLESKHKALDRLHDIMREDEKNVLAAFCRSNVAALVQLLTATSTRIREKTVSIICSLVESGGSCENWLVSEGVLPPLIRLVESGSTFGKEKAIVSLQRLSMSEETTRAIVGHGGVPPLVELCQVGDSVSQSAAACTLKNISAVPEVRNVLAEEGVVKVMINLLSNGILLGTKEYAAECLQNLTASNESLRKLVISEGGVRSLLVYLDGPLPQESAVGALRNLVGSVPEETLVSLGLLPCLVHVLKSGSLGAKQGAASVLCKVCSTIEMKKMLGEVGCIPLLINMLEAKANNARELAAQAIASLMILSENRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVCCLASLSSCKKCKKLMISYGAIGYLKKLIEMEIPGAKKLLERLERGKLRSLFSRK 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01273 519 Gene3D - 102 354 IPR011989 -
Trre15g01273 519 SMART arm_5 389 429 IPR000225 GO:0005515
Trre15g01273 519 SMART arm_5 349 388 IPR000225 GO:0005515
Trre15g01273 519 SMART arm_5 430 472 IPR000225 GO:0005515
Trre15g01273 519 SMART arm_5 267 308 IPR000225 GO:0005515
Trre15g01273 519 SMART arm_5 143 183 IPR000225 GO:0005515
Trre15g01273 519 SMART arm_5 309 348 IPR000225 GO:0005515
Trre15g01273 519 SMART arm_5 226 266 IPR000225 GO:0005515
Trre15g01273 519 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Trre15g01273 519 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 278 321 IPR000225 GO:0005515
Trre15g01273 519 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 238 IPR000225 GO:0005515
Trre15g01273 519 SUPERFAMILY ARM repeat 111 498 IPR016024 -
Trre15g01273 519 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 31 517 - -
Trre15g01273 519 Gene3D - 355 501 IPR011989 -
Trre15g01273 519 Coils Coil 406 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01273 Trre-Chr15 9846731 9848416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01273 164 438 U-box Gene Family AT3G54790 28.571 3.06e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01273 - - var:108346326 786.949