Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01260 ATGAGGAAGCATGGTTTGTGTTTGAATCAAGATAAGAGAATTATCGGCACAATTACCGGTATTTATATCGGAGATGTATTTGTTTATATAACGGAATTAGCTGTCGTTGGTTTACATGGTCAACTAGAAGCCGGCGTTGATTATTTACCTGGTGGCATGAGTTCGAATGGCGAACTGATTGCTACTAGTGTGATTGTTTCTGGTGGATATGAGAATGGTGTTGATCAAGGTGATTTTATTATTTATTCTAGTGATGGTGGTGAGGAAAAGAATTCGAGACAGATTTTTCATCAGAAGTTAGAAGGTGGGAACCTTGCTATGGAGAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCGTTGTGTACAATATGAAGGTACTGCTTCTGTGTTTGATAAGGTTTATTTTTATGATGGTTTGTATAGGATAGTTAAATATTGGGTGGATGGAAAATCTGGTTTTGATGTCTACAAGTTTAAGTTATTGAGAATCGATAGTCAAGCTAAGATGGATTGTGATGTTTTTAATCCTGGGTGTCTTATCTCCCGATATTTCCAACAAAAAGGAGAACATCGTTATTAG 585 0.3641 MRKHGLCLNQDKRIIGTITGIYIGDVFVYITELAVVGLHGQLEAGVDYLPGGMSSNGELIATSVIVSGGYENGVDQGDFIIYSSDGGEEKNSRQIFHQKLEGGNLAMERSMHYGIEVRVIRCVQYEGTASVFDKVYFYDGLYRIVKYWVDGKSGFDVYKFKLLRIDSQAKMDCDVFNPGCLISRYFQQKGEHRY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01260 194 Gene3D - 1 177 IPR036987 -
Trre15g01260 194 SUPERFAMILY PUA domain-like 3 171 IPR015947 -
Trre15g01260 194 SMART G9a_1 11 168 IPR003105 -
Trre15g01260 194 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 170 - -
Trre15g01260 194 ProSiteProfiles YDG domain profile. 16 164 IPR003105 -
Trre15g01260 194 Pfam SAD/SRA domain 15 168 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01260 Trre-Chr15 9741911 9742495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01260 1 168 Su(var)3-9 homologs AT1G73100 43.787 8.90e-37 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01260 K11420 - tpra:123885822 294.664