Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01258 ATGAGTTTTGGGGGTTTTGTAGAAAACAATTCAGGTGGTGGTGGTGGAGGTGTGAGAAACATAGGTGAAATTTCTTACAACAACGAAAGAATGCCATTTGGTTCTTTCTCTCAACCTCGTCTTGTTACAACTCCTGCTTTGGCTAAATCTATGTTTAACTCTCCTGGATTATCACTTGCACTTCAAACTAATATTGATGGACAAGAAGATGTGAATAGATCAATGCATGAAAATTTTGAGCAAAATGGTTTGAGAAGAAGTAGAGAAGAAGAACAAAGTAGATCTGGTAGTGATAACTTGGATGGTGTTTCTGGTGATGAACAAGATGCTGATGATAAACCACCTAGAAAAAAGAGATATCACCGACACACTCCTCAGCAGATTCAAGAGCTTGAAGCTTTGTTTAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGATTGGAACTTAGCAAAAGACTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACTCAATTGGAAAGGCATGAGAACAATTTGCTTAGGCAAGAGAATGATAAGCTAAGAGCTGAAAATATGTCTATAAGGGATGCAATGAGGAATCCTATATGTTCAAATTGTGGTGGTCCGGCTATGATCGGCGAGATTTCACTTGAGGAACAACATCTTCGAATCGAGAATGCAAGGTTGAAGGACGAGCTAGACAGAGTTTGTGCACTAGCCGGGAAATTTTTAGGCCGTCCGATTTCATCGTTGCCAAACTCAAGTTTAGAGCTTGGTGTTGGTGGAAATAACAACAATGGTTTTAATGTGATGAACAATGTTTCTTCAACATTACCTGATTTTAGTGCTGGAATGTCTAATAATCCTTTGGCCATTGTGTCTCCTTCAACTAGACAAACACCTTTGGTTGGTGGATTTGATAGATCGGTCGAAAGGTCTATGTTTCTTGAACTTGCTTTGACTGCTATGGATGAGTTGGTTAAGATGGCACAAACTAGTGAGCCTCTTTGGATAAGGAGTATAGAAGGTGGAAGGGAAATTTTGAACCATGAGGAATATATGAGGACTTTCACCCCCTGCATTGGTTTGAAACCCAATGGTTTTGTCTTTGAGGCCTCTAGAGAGACCGGTACAGTCATTATCAATAGCTTGGCCCTTGTCGAGACTCTTATGGATTCGAATCGATGGATAGAGATGTTTCCTTGCATCATTGCAAGAGCCTCCACAAATGAAGTGATATCAAATGGAATAAATGGAACTAGAAATGGTGCCCTTCAACTAATGCAAGCTGAACTTCATGTGCTATCGCCTTTGGTTCCGGTTCGCGAGGTAAATTTCCTTAGGTTTTGCAAGCAACATGCAGAAGGGGTTTGGGCTGTAGTTGATGTGTCTATAGACACCATCAGAGAAAATTCTGGAGCTACAAGTTTTATGAACTGTAGGAAGCTTCCTTCTGGTTGTGTTGTGCAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGTAGAATATGAGGAAAATCAAGTACACCAGCTGTACAGACCATTGTTGAGCTCAGGTATGGGATTTGGTGCGGCACGCTGGGTTGCTACCCTACAACGCCAGTGCGAGTGCCTTGCCATATTGATGTCTTCCGCTGCACCCTCTCGAGACCACTCTGCAATAACAGCGGGTGGAAGGCGTAGCATGCTAAAGCTAGCACAACGAATGACGAACAACTTCTGCGCAGGGGTATGTGCTTCAACGGTCCACAAGTGGAACAAGCTTAGCCCCGGAAATGTGGACGAAGATGTTAGGGTGATGACACGGAAGAGCGTTGACGATCCTGGCGAGCCACCGGGGATTGTGTTGAGTGCAGCCACGTCGGTTTGGCTCCCCGTTTCGCCTCAAAGACTGTTTGATTTTCTGCGCGATGAGAGGCTCCGCAGTGAATGGGATATACTATCTAACGGTGGTCCCATGCAAGAGATGGCTCATATTGCCAAAGGACAAGATCATGGAAACTGTGTTTCTCTTCTTCGTGCTAGTGCGATGAATTCAAACCAGAGTAGCATGCTGATACTACAAGAAACATGCATAGACGAGGCAGGGTCGCTTGTAGTCTATGCGCCAGTCGATATTCCAGCCATGCATGTTGTGATGAACGGCGGCGATTCAGCTTATGTGGCATTACTACCATCTGGGTTTGCCGTCGTCCCTGATGGACCTGGATCTCGTGGCACTGAGAATGGGGACGCCACCGCAAATGGAGGCGAGGCGCGTGTTAGTGGGTCACTTCTAACCGTGGCGTTTCAAATCCTTGTGAATAGTCTTCCAACAGCAAAACTCACCGTTGAGTCAGTTGAAACGGTTAACAATCTCATTTCTTGCACCGTTCAGAAAATCAAAGCTGCACTTCATTGTGAAAGTTAA 2430 0.4416 MSFGGFVENNSGGGGGGVRNIGEISYNNERMPFGSFSQPRLVTTPALAKSMFNSPGLSLALQTNIDGQEDVNRSMHENFEQNGLRRSREEEQSRSGSDNLDGVSGDEQDADDKPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENNLLRQENDKLRAENMSIRDAMRNPICSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLPNSSLELGVGGNNNNGFNVMNNVSSTLPDFSAGMSNNPLAIVSPSTRQTPLVGGFDRSVERSMFLELALTAMDELVKMAQTSEPLWIRSIEGGREILNHEEYMRTFTPCIGLKPNGFVFEASRETGTVIINSLALVETLMDSNRWIEMFPCIIARASTNEVISNGINGTRNGALQLMQAELHVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRENSGATSFMNCRKLPSGCVVQDMPNGYSKVTWVEHVEYEENQVHQLYRPLLSSGMGFGAARWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLSPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAVVPDGPGSRGTENGDATANGGEARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01258 809 ProSitePatterns 'Homeobox' domain signature. 149 172 IPR017970 GO:0000981|GO:0006355
Trre15g01258 809 CDD homeodomain 116 174 IPR001356 GO:0003677
Trre15g01258 809 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 113 806 IPR042160 -
Trre15g01258 809 CDD START_ArGLABRA2_like 315 543 - -
Trre15g01258 809 Pfam START domain 320 544 IPR002913 GO:0008289
Trre15g01258 809 Gene3D - 103 190 - -
Trre15g01258 809 ProSiteProfiles 'Homeobox' domain profile. 114 174 IPR001356 GO:0003677
Trre15g01258 809 SMART START_1 320 544 IPR002913 GO:0008289
Trre15g01258 809 SMART HOX_1 115 178 IPR001356 GO:0003677
Trre15g01258 809 Pfam Homeodomain 117 172 IPR001356 GO:0003677
Trre15g01258 809 SUPERFAMILY Bet v1-like 572 802 - -
Trre15g01258 809 MobiDBLite consensus disorder prediction 79 96 - -
Trre15g01258 809 FunFam Homeobox-leucine zipper protein GLABRA 2 320 543 - -
Trre15g01258 809 SUPERFAMILY Homeodomain-like 102 174 IPR009057 -
Trre15g01258 809 ProSiteProfiles START domain profile. 311 547 IPR002913 GO:0008289
Trre15g01258 809 SUPERFAMILY Bet v1-like 313 544 - -
Trre15g01258 809 Coils Coil 168 200 - -
Trre15g01258 809 MobiDBLite consensus disorder prediction 79 124 - -
Trre15g01258 809 FunFam Homeobox-leucine zipper protein HDG1 104 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01258 Trre-Chr15 9711238 9717470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01258 1 809 Homeobox Transcription Factor Family AT3G61150 65.181 0.0 1039
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g01258 START 3.9e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01258 K09338 - gmx:100811873 1335.47