Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01257 ATGTTGAGAGATCATGATTCAAGCTACTCTGATTCTCTGTTCGTACGCATCCTATCAAGCAAGTTTTGTAGGCTTAATCGAAGGCACAATTTCTTCGATGAAACCCAACCGTTAAATAAGTTAGATAATTTGGAGTTTCTTGAAATACTTGGCGAAGGTGGTTTCGGTAGAGTTTTCAAATGTCATAATGTCGAAGATAATAGTATTGTAGCCGTAAAACAAATTTGTATTCGTGATAGTGACGATGCTGTTCCCGCTGCCATCATTAGAGAGATCTCCTTTCTTAAAGAATTAAATCATCCCAACGTTGTTAGGTTATTAGGTGTAATCAACAAGGGCACAAGATTTGTGAACCTAGTTTTTGAGTATCTTGATTGTAATCTTTCTCAATACATTAAAGAGAATCAATGCTGCGGTTCATGTTCATCTTTTAATGATCCCATGAATATAAAGAGTTTTTTGTATCAGATTCTGTCTGCAGTGAATTACTGCCATTGTCACGAGATTATTCACAGAGATTTGAAACCAACTAATCTTCTAATCGATCGTTCCGAAAAGATAATCAAGTTGGCTGATTTTGGTTTGGCCAGAGAGTTAGGAGATCCTGACATGAAGTATATTGAGGAGGTGGCAACTTCGTGTTATAGAGCACCTGAAATATTGTTTGAATGTGGTAAATATTCAACTCCAATTGATATTTGGTCTGTGGGCTGTATATTTGGTGAGATGTTACTTGGAAAACCAATACTCGAAGGAAAATATTGGATGAATGAATTAGAAATGATTTTTTGTATGTTCGGTACTCCTAAAGTGGAAACGTGGCCAGAGATCACTAAATTGTGTACTAACATTACAACCTATCCCAAATATGAACCAATGGACCTATCAACAATATTTTATGCTGTTGATCCAACCGGTCTTAATCTTCTAACCACAATGCTTTGCCTAAACCCAAATAAAAGAATTACTGCCGAAGCTGCTCTAAAGCATGCCTACTTTAATGACTTGGTCTTGCATCCAGTATGCCTTCTATTACTCTCTTACTGTATTATATTGTATGTCTCTTGCTGCTACTTCTTTAATTAA 1086 0.361 MLRDHDSSYSDSLFVRILSSKFCRLNRRHNFFDETQPLNKLDNLEFLEILGEGGFGRVFKCHNVEDNSIVAVKQICIRDSDDAVPAAIIREISFLKELNHPNVVRLLGVINKGTRFVNLVFEYLDCNLSQYIKENQCCGSCSSFNDPMNIKSFLYQILSAVNYCHCHEIIHRDLKPTNLLIDRSEKIIKLADFGLARELGDPDMKYIEEVATSCYRAPEILFECGKYSTPIDIWSVGCIFGEMLLGKPILEGKYWMNELEMIFCMFGTPKVETWPEITKLCTNITTYPKYEPMDLSTIFYAVDPTGLNLLTTMLCLNPNKRITAEAALKHAYFNDLVLHPVCLLLLSYCIILYVSCCYFFN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01257 361 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Trre15g01257 361 CDD STKc_CDK_like 45 333 - -
Trre15g01257 361 ProSiteProfiles Protein kinase domain profile. 44 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01257 361 Gene3D Phosphorylase Kinase; domain 1 36 124 - -
Trre15g01257 361 SMART serkin_6 44 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01257 361 PANTHER CELL DIVISION PROTEIN KINASE 44 333 - -
Trre15g01257 361 SUPERFAMILY Protein kinase-like (PK-like) 39 337 IPR011009 -
Trre15g01257 361 FunFam CMGC family protein kinase 126 338 - -
Trre15g01257 361 Gene3D Transferase(Phosphotransferase) domain 1 136 339 - -
Trre15g01257 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Trre15g01257 361 Pfam Protein kinase domain 45 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01257 Trre-Chr15 9698510 9702036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01257 41 336 Core Cell Cycle Gene Families AT3G48750 46.465 2.73e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Trre15g01257 Pkinase 2.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01257 K02206 - gmx:100799974 297.745