Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01246 ATGCCTCGTGGAACACTTGAAGTTGTTTTGATCAGTGCCAAAGGTCTTGAGGACAATGATTTTCTCTCTAGCATAGATCCTTATGTGATTCTTACTTATAGGGCACAAGAGCACAAGAGTAGTGTGCAAGAAGGTGCTGGATCTAACCCTCAATGGAATGAGACTTTTCTTTTCACTGTTTCTGACAGTGCTTCTGAGCTCAATCTAAAGTTAATGGAAAAGGACAACTTTACTAATGATGATAATATTGGAGAAGCAGTAATTCCTTTGGATGCAGTTCTTGAAGAGGGTAGCCTTCCAGAGACTGCTTACAATATTGTGAAGGACCAAAAGTATTGTGGTGAGATTAAGGTGGCTCTCACTTTTACAGCTGAGAGAAATTATGATCGGGGTTACAATGAAGATGAGGAAACCACTGGTGGATGGAAAGAATCAGCTAGAGACTTTTGA 450 0.4022 MPRGTLEVVLISAKGLEDNDFLSSIDPYVILTYRAQEHKSSVQEGAGSNPQWNETFLFTVSDSASELNLKLMEKDNFTNDDNIGEAVIPLDAVLEEGSLPETAYNIVKDQKYCGEIKVALTFTAERNYDRGYNEDEETTGGWKESARDF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01246 149 PANTHER C2 DOMAIN-CONTAINING 1 136 - -
Trre15g01246 149 Pfam C2 domain 4 104 IPR000008 -
Trre15g01246 149 Gene3D C2 domain 2 124 IPR035892 -
Trre15g01246 149 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 124 IPR035892 -
Trre15g01246 149 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Trre15g01246 149 SMART C2_3c 5 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01246 Trre-Chr15 9595964 9598222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01246 4 94 C2H2 Transcription Factor Family AT4G21160 32.967 4.79e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01246 - - gmx:100500006 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01246 15 9595964 9598222 Trre15g01246 15 9595964 9598222 ECH