Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01219 ATGAGGAATGCAGAATGTCAGCTGGCTATGAATGTTCTTTGGACAAGATTGAGTGAAACTGGAAAGGATTGGCGATATGTATACAAGTTTGTCGTAGATCGAGTTTTTTTTCCCGCTGAATTGAATGAGGTTTTGACAAGAGAGCTTGCTGAGGATGGTTATTCTTGGCAAAAAAGGCAGAGAGCTGAATATCTCAGGCACAGGGGAAGAGTGTGGTTATGCGTGGGAGAATAG 234 0.4274 MRNAECQLAMNVLWTRLSETGKDWRYVYKFVVDRVFFPAELNEVLTRELAEDGYSWQKRQRAEYLRHRGRVWLCVGE 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01219 77 Gene3D - 23 66 IPR015946 -
Trre15g01219 77 SUPERFAMILY ENTH/VHS domain 5 29 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01219 Trre-Chr15 9478021 9479103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01219 29 55 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 85.185 3.99e-08 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01219 K12471 - csav:115697285 61.2326