Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01211 ATGGTGAACCAGATCGAACAGCTGAAGATGCGATGGGGAGAATTGGAAGAAGATGACGGAGAGAATCTCGATTTCCTTTTACCGCCGCGTGCTGTGATAGGACCTGACGAAAACGGAATCAAGAAAGTGATTGAATACAAATTTGATGATGATGGTAATAAGGTTAAGATTACAACAACCACTCGCACTCGCAAACTCGCTAACGCGCGTATCAGTAAACGCGCCGTTGAACGTCGCTCTTTGCCTAAGTTTGGTGATGCTGTTAATGAAGACGTCGGTAGTCGTCTTACCATGGTTTCTACTGAAGAGATCGTTCTTGAACGCCCTAAGCCAATTGGTTCCCAAAAGGAGGTGGCAATGCCTGACCCAAAAGTAGGTGCTGTTATTATGCAGTGCAGGATTTGTTTGAAGAAGGGTGAACATTGGACTGCAAAGTGTCCACTTAAGGATATCTCACAACCACCTGAGGTATTTGTTGATAATGATATGCCTGTAATATCGAATGGATCTGGTTCCAATCCGGGTAAGTATGTACCTCCTAGCAAGAAACCTGGTGCTGATAAGACTAGGGTGCCGCAGCAGAAAGATGAGAATTCTGTGCGGGTAACCAACCTATCGGAGGACACAACCGAGCCTGATTTGCATGAACTATTCCGTCCCTTTGGTTCTATCAGCAGAGTCTATGTTGCTATTGATAAAACAACTCACATGAGTAGGGGTTTTGGTTTTGTCAGCTTTGTAAGCAGGGAAGATGCTCAGAGAGCTATTAACAAACTCAATGGATATGGCTACGACAATCTCATCCTGAAAGTTGAATGGGCCTCCCCAAGAACAACCTAA 840 0.4476 MVNQIEQLKMRWGELEEDDGENLDFLLPPRAVIGPDENGIKKVIEYKFDDDGNKVKITTTTRTRKLANARISKRAVERRSLPKFGDAVNEDVGSRLTMVSTEEIVLERPKPIGSQKEVAMPDPKVGAVIMQCRICLKKGEHWTAKCPLKDISQPPEVFVDNDMPVISNGSGSNPGKYVPPSKKPGADKTRVPQQKDENSVRVTNLSEDTTEPDLHELFRPFGSISRVYVAIDKTTHMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILKVEWASPRTT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01211 279 Pfam Eukaryotic translation initiation factor 3 subunit G 32 151 IPR024675 -
Trre15g01211 279 SUPERFAMILY RNA-binding domain, RBD 176 277 IPR035979 GO:0003676
Trre15g01211 279 MobiDBLite consensus disorder prediction 163 201 - -
Trre15g01211 279 SMART rrm1_1 199 272 IPR000504 GO:0003723
Trre15g01211 279 PIRSF Transl_init_eIF-3_RNA-bind 1 279 IPR017334 GO:0003743|GO:0005737|GO:0005852
Trre15g01211 279 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 278 IPR017334 GO:0003743|GO:0005737|GO:0005852
Trre15g01211 279 Gene3D - 167 279 IPR012677 -
Trre15g01211 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 276 IPR000504 GO:0003723
Trre15g01211 279 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 19 275 - -
Trre15g01211 279 CDD RRM_eIF3G_like 199 274 IPR034240 -
Trre15g01211 279 FunFam Eukaryotic translation initiation factor 3 subunit G 165 279 - -
Trre15g01211 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 266 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01211 Trre-Chr15 9439667 9441371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01211 3 279 Eukaryotic Initiation Factors Gene Family AT3G11400 57.367 3.14e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01211 K03248 - gmx:100818725 389.423