Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01208 ATGTCTTTCACTGGAACTCTTGACAAATGCAAGGCATGTGACAAGACTGTGTATGTGGTTGATTTGTTAACTCTTGAAAATATACCATATCATAAAAGTTGCTTCAAATGTAGTCATTGCAAAGGATATCTTACGATGAGTACATACTCTTCCATGGATGGAATTCTCTATTGCAAGACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTTAGCAAGAACTTCGCAAAGTCTTCTGACAAGCAAAATGAACTGAATAGGACACCAAGTAGACTATCTTCCATGTTCAGCGGTACCCTGGACAAATGCGCGACTTGCTCTAAAACCGTCTACCCATTGGAAAAGGTGACATTGGAAGGTGAATGCTACCACAAGAATTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAACTATGCTGCACTAGATGGTGTCCTCTATTGTAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGTAACTATAGCCATGTACTCAAATCTGCACACAAGAGGAATGGTTCTTCTCCACTTTCTGAAGCAACACTTGAAGTTGTTGAAGAACCTTCACAACCAGCAGAAGCTGAAGCACCTGAAGATCAACCAGCTGAAGAAACCTCTTGA 636 0.4119 MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKSCFKCSHCKGYLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFAKSSDKQNELNRTPSRLSSMFSGTLDKCATCSKTVYPLEKVTLEGECYHKNCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLKSAHKRNGSSPLSEATLEVVEEPSQPAEAEAPEDQPAEETS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01208 211 Gene3D Cysteine Rich Protein 5 100 - -
Trre15g01208 211 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Trre15g01208 211 PANTHER OS06G0237300 PROTEIN 6 82 - -
Trre15g01208 211 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Trre15g01208 211 SMART lim_4 103 155 IPR001781 -
Trre15g01208 211 SMART lim_4 9 61 IPR001781 -
Trre15g01208 211 FunFam LIM domain and actin-binding 1 98 168 - -
Trre15g01208 211 MobiDBLite consensus disorder prediction 174 211 - -
Trre15g01208 211 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Trre15g01208 211 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Trre15g01208 211 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Trre15g01208 211 CDD LIM1_SF3 6 68 - -
Trre15g01208 211 FunFam LIM domain and actin-binding 1 4 74 - -
Trre15g01208 211 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Trre15g01208 211 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Trre15g01208 211 Pfam LIM domain 10 65 IPR001781 -
Trre15g01208 211 Pfam LIM domain 104 159 IPR001781 -
Trre15g01208 211 Gene3D Cysteine Rich Protein 101 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01208 Trre-Chr15 9418133 9419953 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Trre15g01208 LIM 2.1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01208 - K09377 gmx:100305845 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01208 15 9418133 9419953 Trre15g01208 15 9418133 9419953 ECH
Trre13g02579 13 23714225 23716489 Trre15g01208 15 9418133 9419953 PCT