Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g01198 | ATGGGGTTGAAGAAAGGTCCATGGACAACTGAAGAAGATGAAATTCTTGTTAATTTTATCAAGAAAAATGGTGGTCATGGAAGTTGGCGTTCTCTTCCTAAGTTAGCAGGCCTTCGTCGTTGCGGTAAGAGTTGCCGACTAAGATGGACGAACTACCTGAAACCTGATATTAAACGCGGTCCCTTTACACCTCAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAATAGGTGGGCTGCAATAGCTTCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAATTTATGGAACACACACTTAAAGAAACGTCTCATATGCATGGGAATTGATCCACAAACTCATGAACCAATAGCCTCATCAAATTACTATCCAATTTCAAAATCAAATTCATCTATCGCCACGCGTCACATGGCTCAATGGGAAAGTGCAAGACTCGAAGCAGAAGCAAGGCTCTCAAAAGACTCATCTTTATTCAACAATAACAACATTACTTCTTTTGCAAGTAACAAATCTGATTCTGATTCTGACTATTTCCTTAAGATATGGAACTCTGAAGTTGGAAAATCTTTTCGCTCCGTTCATAAATTAGACAATGACGACGACGATGATAAAACTAGGTGCATAAGTTCCATGTCTCAAGAAGGGTCATCTTGTAATAATACAAAATGTGGATCAGTTTCTGCTACTACTACTATAACAGATTTGGCTTCATCAACTCTTGCAAGCAATGTGAAAGAAGATTTTGAATGGAGAAACTACAAATCATTTGATATTGGTTATGATGATTCATCAAGCTCTAATGATCTTGAAGACTCATCTGACACTGCATTGCAGCTCTTGTTGGATTTTCCTTCTAACAATGACATGAGCTTCTTGGAATAA | 894 | 0.3848 | MGLKKGPWTTEEDEILVNFIKKNGGHGSWRSLPKLAGLRRCGKSCRLRWTNYLKPDIKRGPFTPQEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGIDPQTHEPIASSNYYPISKSNSSIATRHMAQWESARLEAEARLSKDSSLFNNNNITSFASNKSDSDSDYFLKIWNSEVGKSFRSVHKLDNDDDDDKTRCISSMSQEGSSCNNTKCGSVSATTTITDLASSTLASNVKEDFEWRNYKSFDIGYDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE | 297 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g01198 | 297 | ProSiteProfiles | Myb-like domain profile. | 54 | 104 | IPR001005 | - | |
Trre15g01198 | 297 | CDD | SANT | 61 | 104 | IPR001005 | - | |
Trre15g01198 | 297 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 1 | 221 | - | - | |
Trre15g01198 | 297 | Pfam | Myb-like DNA-binding domain | 59 | 104 | IPR001005 | - | |
Trre15g01198 | 297 | Pfam | Myb-like DNA-binding domain | 5 | 53 | IPR001005 | - | |
Trre15g01198 | 297 | Gene3D | - | 61 | 108 | - | - | |
Trre15g01198 | 297 | Gene3D | - | 2 | 59 | - | - | |
Trre15g01198 | 297 | ProSiteProfiles | Myb-like domain profile. | 1 | 53 | IPR001005 | - | |
Trre15g01198 | 297 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 57 | IPR017930 | - | |
Trre15g01198 | 297 | FunFam | MYB-related transcription factor | 4 | 58 | - | - | |
Trre15g01198 | 297 | FunFam | MYB transcription factor | 61 | 108 | - | - | |
Trre15g01198 | 297 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 58 | 108 | IPR017930 | - | |
Trre15g01198 | 297 | CDD | SANT | 7 | 53 | IPR001005 | - | |
Trre15g01198 | 297 | SUPERFAMILY | Homeodomain-like | 1 | 100 | IPR009057 | - | |
Trre15g01198 | 297 | SMART | sant | 4 | 55 | IPR001005 | - | |
Trre15g01198 | 297 | SMART | sant | 58 | 106 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g01198 | Trre-Chr15 | 9344999 | 9347582 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g01198 | 1 | 297 | MYB Transcription Factor Family | AT3G61250 | 59.532 | 1.97e-114 | 330 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Trre15g01198 | Myb_DNA-binding | 1.3e-13 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g01198 | K09422 | - | gmx:100816569 | 383.645 |