Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01196 ATGAACAATAACAACAATAGAGCGAGATATCCACCACCTGGGATCGGTCCTGGACGTGGTGGTTCGAATCCCAATGTGAATCTGAACCAAAACCCAAACCAGAACCCTAATTTGAACCATCAGTTTCAGCAAAGAGCACCTTATAATCACCATAACCAGCAACAACAGCTCCAACAACAACCGAATCAGTACCAGCACCAGCAGCAGCAGCAACAACAACAACAATACTATGCGCAGAGACAAATGGCGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGTGGCTGAGAAGGACACAGTTGGGTGGTTCCGAATCGAACGCTGTTGCCGATGAGGTTGAGAAGACTGTGCAATCGGAAGCCACTGACCCGAGTTCTCAAGACTGGAAGGCAGAACTAAAGATTCCGCCAGCTGATACACGTTATAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAACGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCCCCCATCCAAGAAGAAAGCATTCCAATAGCTCTTACCGGCAGCGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTCATCTTGGTCCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATCTGAAAATCCAAGTTATGGTTACAACAGGTGGTACCAGTCTAAAAGATGACATAATGCGTTTATATCAACCGGTTCATCTACTGGTTGGAACCCCAGGAAGGATATTAGATCTTGCGAAGAAGGGTGTTTGTGTTCTTAAAGATTGCTCCATGCTTGTCATGGATGAGGCTGATAAGCTGCTCTCTCCAGAGTTCCAGCCCTCAATTCAACAGCTGATTAATTTTCTCCCTACAAACCGTCAAATCCTGATGTTTTCAGCAACATTTCCTGTTACTGTGAAGGACTTCAAAGATAGGTTTCTTCATAAACCATATGTCATTAACCTTATGGATGAGCTCACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCTTAAATACTCTATTTTCCAAGCTGCAAATAAACCAGTCAATTATCTTCTGCAATTCAGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACTGAACTTGGTTATTCATGCTTCTATATTCACGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGATTTCCGCAATGGTGCATGCCGAAATCTTGTCTGTACCGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTTAATGTTGTTATTAACTTTGATTTTCCCAAGAACTCAGAAACTTATTTGCACAGGGTTGGTCGTTCGGGGAGGTTTGGCCACCTTGGTTTAGCAGTGAACTTGATCACTTATGAGGACCGCTTTAATTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCGCCACACATTGATCAAGCATTTTATTGTCGGTGA 1596 0.4229 MNNNNNRARYPPPGIGPGRGGSNPNVNLNQNPNQNPNLNHQFQQRAPYNHHNQQQQLQQQPNQYQHQQQQQQQQQYYAQRQMAQQQQQQQQQQQQQQQWLRRTQLGGSESNAVADEVEKTVQSEATDPSSQDWKAELKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQQLINFLPTNRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01196 531 Pfam DEAD/DEAH box helicase 182 346 IPR011545 GO:0003676|GO:0005524
Trre15g01196 531 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 69 530 - -
Trre15g01196 531 MobiDBLite consensus disorder prediction 22 71 - -
Trre15g01196 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 511 IPR027417 -
Trre15g01196 531 MobiDBLite consensus disorder prediction 101 141 - -
Trre15g01196 531 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 358 IPR014001 -
Trre15g01196 531 Pfam Helicase conserved C-terminal domain 383 489 IPR001650 -
Trre15g01196 531 MobiDBLite consensus disorder prediction 1 71 - -
Trre15g01196 531 SMART helicmild6 408 489 IPR001650 -
Trre15g01196 531 FunFam ATP-dependent RNA helicase DDX6 362 531 - -
Trre15g01196 531 Coils Coil 78 102 - -
Trre15g01196 531 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 304 312 IPR000629 -
Trre15g01196 531 SMART ultradead3 176 372 IPR014001 -
Trre15g01196 531 CDD DEADc_DDX6 159 359 - -
Trre15g01196 531 Gene3D - 113 361 IPR027417 -
Trre15g01196 531 CDD SF2_C_DEAD 369 498 - -
Trre15g01196 531 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Trre15g01196 531 FunFam ATP-dependent RNA helicase DDX6 138 361 - -
Trre15g01196 531 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 528 IPR001650 -
Trre15g01196 531 Gene3D - 362 530 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01196 Trre-Chr15 9332103 9340267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01196 157 524 Eukaryotic Initiation Factors Gene Family AT3G19760 38.649 2.78e-94 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01196 K12614 - fve:101307921 845.884