Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01190 ATGGATCGAGGCGACCAAATGGCGGCATTACCGGGATCGTACTTTATGCAGAGAGGATTACCTGGTTCTGGTAACCAACATGAATTGCATAATCCGCCCGGTATTCGTCAACTACCGAATACCAATTCACCATTTCAACCAAGTATCGGCGGTACTATTGGATCCACATTGCCGATGGATTCTTCTGGAATTTCATCTCAATGTATCAATGTAGGTACTCCTTCTGCGGCTGGTTCAACTGGTGAACCTGTCAAAAGGAAGCGAGGAAGGCCTAGAAAGTATGGGGCTGACGGAAATGTGTCGTTGGGGTTGACTCCAACAACACCAGCAAGTCAACCTGGATCTGTGCCGCAAGTCCAGAAACGCGGTCGCGGACGCCCTCCAGGGTCAGGGAAGAAGCAACAATTGGCTGCTGTTGGTGGTTTGATCTCAAGTTCAGCTGGGAATGGTTTCACACCACATGTTATCAATGTCGCAATTGGAGAGGACATTGCGACAAAAATTCTGGCATTTTCTCAGCAGGGACCTAGAGCTATATTTGTTATGGCAGCCACTGGCGCTGTCTCTACTGTGACGCTTTGTCAAGCTTCGTCCTCTGGGGGATCTGTCACATATGAGGGACGCTTTGAGATCCTAAGCCTATCAGGCTCTTACTTGGTTGCTGATAATGGTGGCCCCCGAAATCGAACTGGTGCATTAAGCGTTTGTCTTGCAAGTCCTGATGGCCGTGTCATTGGTGGTGGTGTCAGTGGACTGCTAATTGCTGCAAGTTCTGTTCAGGTGATAATTGGGAGCTTTATGTGGGGCGGACAAAAGACAAAGAACAAGAAGAATGAAGATTCGGAAGGTCAAGAAGTTGGTATAGAGGCAGATCATCATCATCAGCATGGAGTTCACAATCCAGTTCCAATGAACAACATCTCTTCACCAAATCAGAATCTTACTCCATCAGCTCTCAATTCTTGGCCTGCATCGCGTTCGTTGGATATGCGTAATTCGCATATTGACATTAATTTAATGCGCGGGTGA 1029 0.4752 MDRGDQMAALPGSYFMQRGLPGSGNQHELHNPPGIRQLPNTNSPFQPSIGGTIGSTLPMDSSGISSQCINVGTPSAAGSTGEPVKRKRGRPRKYGADGNVSLGLTPTTPASQPGSVPQVQKRGRGRPPGSGKKQQLAAVGGLISSSAGNGFTPHVINVAIGEDIATKILAFSQQGPRAIFVMAATGAVSTVTLCQASSSGGSVTYEGRFEILSLSGSYLVADNGGPRNRTGALSVCLASPDGRVIGGGVSGLLIAASSVQVIIGSFMWGGQKTKNKKNEDSEGQEVGIEADHHHQHGVHNPVPMNNISSPNQNLTPSALNSWPASRSLDMRNSHIDINLMRG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01190 342 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Trre15g01190 342 SMART AT_hook_2 121 133 IPR017956 GO:0003677
Trre15g01190 342 MobiDBLite consensus disorder prediction 35 77 - -
Trre15g01190 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 55 303 IPR039605 GO:0003680
Trre15g01190 342 ProSiteProfiles PPC domain profile profile. 148 289 IPR005175 -
Trre15g01190 342 Gene3D - 153 296 - -
Trre15g01190 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 269 - -
Trre15g01190 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 153 266 IPR005175 -
Trre15g01190 342 CDD DUF296 152 266 IPR005175 -
Trre15g01190 342 MobiDBLite consensus disorder prediction 101 118 - -
Trre15g01190 342 MobiDBLite consensus disorder prediction 14 136 - -
Trre15g01190 342 MobiDBLite consensus disorder prediction 295 325 - -
Trre15g01190 342 MobiDBLite consensus disorder prediction 301 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01190 Trre-Chr15 9285275 9288420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01190 1 342 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 48.626 1.81e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01190 - - gmx:100799791 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01190 15 9285275 9288420 Trre15g01190 15 9285275 9288420 ECH
Trre13g02559 13 23526141 23530181 Trre15g01190 15 9285275 9288420 PCT