Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01162 ATGGTTAATCCAAGTGAGGTTAGTGACACAATTTATGTTGCTGTGGCTAAAGATGTGAAAGATAGTAAATTAAATGTGATATGGGCAATACAAAATTCTGGTGGAAAGAGTATTTGTATTCTTCATGTGCATGTGCCAGCTCCAAAGATCCCTATGATGGGAGCTAAATTTCCAGCAAATGCATTGACAAGGCAAGAAGTTAAAGCATACAGGGAAATTGAAAGTCAAGACATGCATAAGACTCTTGATGCTTATCTTCTTATCTGTCAAAGAATGGGGGTGAGGGCAAATAAATTGCACATTGAAATGGATTGCATTGAAAAAGGGATTATAGAACTTATATCCCAACATAACATACAAAACCTTGTAATGGGAGCAGCTTCTGATAAGTACCATTCTAGGAGAATGACAGGTCTAAGATCTAAGAAAGCCATCTATGTATGGGAACAAGCTCCAGCTTCTTGTCATATACAGTTTATCTGCAAAGGGTATCTTATACAAACAAGGGATTGCAGTTTGGATAAACTTAGAGTAGAGGGCACATCTCCATTGGCAAAGCAAATGCAAAACTCTGAAGTTGGTCACTCACCTCATCACTTAAGATCTAAATCAATCTCACATGATCAAGAGTTACTTCATCATAGAGTAGGATCTATGAGCTCAGTATCTGAAAGTGGAAGGAGCATAGCATCATCTGTTTCTTCTTCAGAATGGTTTTCAACTTCACAAAGCAAGTTTGATAAAGAACCAAGTTTGAGTCCTTCACCTTCATCAGTTGAAACTGCAGCAGCATTGAACACAAATTTGATTAGTATCAAAGAGGAGGATCTTTATCATTCATCACCTCCTAGTGTGCTGGATGGAGGAAGGGATGATAGTTTGTATGATCAACTTGAACAGGCTATGGCTGAGGCTGAGAAGGCTAGGCGGGATGCGTATCAAGAAACTGTTAGGCGTCGGAAAGCTGAAAAAGATGTCATTGATGCTTTACGCAAGACTAAAGACATCAAAATCTTGTACGAAGAAGAGGTGAAACTACGGAAAGACTTAGAGGAGGCGTTAGAGAAAGCAGAAGAAGAAATCGACAACATGAGACACGAAATAGAACAAGTCAATAAGGAACTCGAACTTGCCTTGCATCAGAAGTCATCAACAGAGAATCAAATTGGTGAACCCTCAAGAACACAATCTCTTCAACTTTTGTCAGAGTTTTCTTTTTCAGAGATTGAAGAAGCAACATGTAACTTCAATCCATCGTTAAAGATTGGTGAAGGCGGATATGGAAGTATATTTAAAGGCAGCCTTCGTCACACTGAAGTTGCTATAAAAATATTGAACCCTAACAGCACTCAAGGACCCTCAGAGTTTCAACAAGAGGTTACGGTATTAAGCAAGTTAAGGCATCCAAATCTTGTCACACTTATAGGAGCAAACCAAGAATCAAGGACTCTTATCTATGAATATTTACCAAATGGAAGCCTCGAGGATCATCTCAGCCGCAACGACAGTAATACCTCTCCATTATCATGGCAGACTCGAATTCGCATCGCGACAGAATTATGTTCTGCTCTAATTTTTCTCCATGCCAATAAACCTCACAGCATAGTGCATGCATTAGGAATAAAGAATGAAGTGTTAGATGCATTAAATAATGCTGATGGAGAATTGAAATCACTTTTGGATCCTTTAGCTGGAGATTGGCCTATTTCGGAAGCCGAAAATTTAATTCATTTGGCTTTAAGTTGCTGTGATATGAATAAAAGGAGAAGGCCAGAACTTTGTTCAGATGTGTGGAAAGTGTTGGAACCAACGAGAGCTTCTTGTAGTAGTGGCGCAATCGCGAACACTTTTGGTCTTAAGTCCTGTTTGGATAAACAACTTAATAGAACGACTTAA 1896 0.3898 MVNPSEVSDTIYVAVAKDVKDSKLNVIWAIQNSGGKSICILHVHVPAPKIPMMGAKFPANALTRQEVKAYREIESQDMHKTLDAYLLICQRMGVRANKLHIEMDCIEKGIIELISQHNIQNLVMGAASDKYHSRRMTGLRSKKAIYVWEQAPASCHIQFICKGYLIQTRDCSLDKLRVEGTSPLAKQMQNSEVGHSPHHLRSKSISHDQELLHHRVGSMSSVSESGRSIASSVSSSEWFSTSQSKFDKEPSLSPSPSSVETAAALNTNLISIKEEDLYHSSPPSVLDGGRDDSLYDQLEQAMAEAEKARRDAYQETVRRRKAEKDVIDALRKTKDIKILYEEEVKLRKDLEEALEKAEEEIDNMRHEIEQVNKELELALHQKSSTENQIGEPSRTQSLQLLSEFSFSEIEEATCNFNPSLKIGEGGYGSIFKGSLRHTEVAIKILNPNSTQGPSEFQQEVTVLSKLRHPNLVTLIGANQESRTLIYEYLPNGSLEDHLSRNDSNTSPLSWQTRIRIATELCSALIFLHANKPHSIVHALGIKNEVLDALNNADGELKSLLDPLAGDWPISEAENLIHLALSCCDMNKRRRPELCSDVWKVLEPTRASCSSGAIANTFGLKSCLDKQLNRTT 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01162 631 ProSitePatterns Protein kinases ATP-binding region signature. 422 443 IPR017441 GO:0005524
Trre15g01162 631 Pfam Protein tyrosine and serine/threonine kinase 421 537 IPR001245 GO:0004672|GO:0006468
Trre15g01162 631 PANTHER OS02G0152300 PROTEIN 539 606 - -
Trre15g01162 631 Coils Coil 336 388 - -
Trre15g01162 631 CDD STK_N 10 163 - -
Trre15g01162 631 FunFam receptor-like protein kinase FERONIA 379 488 - -
Trre15g01162 631 Gene3D Transferase(Phosphotransferase) domain 1 399 605 - -
Trre15g01162 631 Coils Coil 291 315 - -
Trre15g01162 631 SUPERFAMILY Protein kinase-like (PK-like) 392 537 IPR011009 -
Trre15g01162 631 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 30 136 - -
Trre15g01162 631 ProSiteProfiles Protein kinase domain profile. 416 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01162 Trre-Chr15 9045273 9049944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01162 538 618 U-box Gene Family AT2G45910 54.321 1.80e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre15g01162 PK_Tyr_Ser-Thr 5.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01162 - - tpra:123883511 866.685