Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01157 ATGGATGAATACTATTGCGATGCATACCCAAACTTTTCACCAACTGATTTTGATACACAAAATAGTTCGTCATGTCCCGCTGACAAGTACTTCAATGTAGAGTTTGAGTGCACAAATATGTACGTTTTGAGTGCTAGAGACTTTCAAACTATGAGTGACATAAAGTGTCACATATTTTCAGATGTCTCTAAGGATAAAATAATGCAAGAAACTACAATTGTATCGTGGCTTTCTCAAATGGATGTCCCTCAAGATGCTTTTAAGTTTGTGGTGGCAAAAATCATGGAATGCGCTCGTCATATGGTTAGCACACACAAGAATTTAAGGGTTCTTCCTATTCGCGTCAATCTTGTTGTTACAAGAGCCAGTGAAGATGAAAGTGATGAAGATGATGAAAGTGATATAAGTGATGAAAGCGATGAAGCAGAAGGATCAGAGGCGGTGAATGTTGAAAAAGAGAAGAATTGTGCTATTTGTTTTGAAAATTTTAATCTTAACGTAGGTGTTCCCATGCCATGTTTGCACGTGTTTCATATAAAATGTATTCGTGGTTGGTTAGAGAAAGGTAATTCTTGTCCTTTGTGTAGACATCAATTGCCTAATAATTAA 609 0.3645 MDEYYCDAYPNFSPTDFDTQNSSSCPADKYFNVEFECTNMYVLSARDFQTMSDIKCHIFSDVSKDKIMQETTIVSWLSQMDVPQDAFKFVVAKIMECARHMVSTHKNLRVLPIRVNLVVTRASEDESDEDDESDISDESDEAEGSEAVNVEKEKNCAICFENFNLNVGVPMPCLHVFHIKCIRGWLEKGNSCPLCRHQLPNN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01157 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 202 IPR013083 -
Trre15g01157 202 ProSiteProfiles Zinc finger RING-type profile. 156 196 IPR001841 -
Trre15g01157 202 MobiDBLite consensus disorder prediction 124 144 - -
Trre15g01157 202 MobiDBLite consensus disorder prediction 122 148 - -
Trre15g01157 202 SUPERFAMILY RING/U-box 155 200 - -
Trre15g01157 202 Pfam Ring finger domain 155 196 IPR001841 -
Trre15g01157 202 SMART ring_2 156 195 IPR001841 -
Trre15g01157 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 84 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01157 Trre-Chr15 9000586 9001194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01157 149 202 C3H Transcription Factor Family AT5G01980 50.909 1.03e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01157 - - mtr:11431540 221.09