Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01155 ATGTACTTTCCTGCCCATAGAAATGATGATCTTAAGTGTGCTCTTGAGGTTTATGGGTTAAGTAACATCATTAAATTCATGAGATCTGCGCAACCATATCAAAGACAAACCACTGCAAATTCATTTCTTTTTGAAGGTTATGCTTGGAGAATTCATCCAACTAGTGGTTTATTTGGGTATAAGTCATTTATGGATGAACAAATAAATTTGTCTTTGCGTGAATTACAAATTGCTAATAGCCTTTTGAAGTTTTGTAAGGATCATGTAAACTCAAATTCTGAAAGGAATGATGGAATTCCAACTACTCGTGAAAGAGGAGAATCAAGTAATGCTGCATCCAAGGGAAATACTCAAGAGAAAGAAAAGGAAAAACAAGTACTTTTTGATCTAAATGAACCAGCTGTTGATGATGAGACCGCTCAAGAGAAAGAAAAGGGAAAACAAGTTCTTATGATTGATCTAAATGAACCAGCTAATGAGGAGGAGGAAGATTAG 495 0.3495 MYFPAHRNDDLKCALEVYGLSNIIKFMRSAQPYQRQTTANSFLFEGYAWRIHPTSGLFGYKSFMDEQINLSLRELQIANSLLKFCKDHVNSNSERNDGIPTTRERGESSNAASKGNTQEKEKEKQVLFDLNEPAVDDETAQEKEKGKQVLMIDLNEPANEEEED 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01155 164 ProSiteProfiles LOB domain profile. 1 82 IPR004883 -
Trre15g01155 164 Pfam Lateral organ boundaries (LOB) domain 2 78 IPR004883 -
Trre15g01155 164 MobiDBLite consensus disorder prediction 90 164 - -
Trre15g01155 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 116 - -
Trre15g01155 164 MobiDBLite consensus disorder prediction 116 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01155 Trre-Chr15 8991817 8993072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01155 2 70 AS2 family AT2G19820 42.857 9.93e-11 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre15g01155 LOB 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01155 - - tpra:123883523 273.092