Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01154 ATGAACCAACAAAATATAGCTAATAGATGTCTTTTATGTAAGCGTTTGAGAACAAATTGTAATATTAATAATTGTGAATTTGGCATGTACTTTCCTGCCCATAGAAATGATGATCTTAAGTGTGCTCTTGAGGTTTATGGGTTAAGTAACATCATTAAATTCATGAGATCTGCGCAACCATATCAAAGACAAACCACTGCAAATTCATTTCTTTTTGAAGGTTATGCTTGGAGAATTCATCCAACTAGTGGTTTATTTGGGTATAAGTCATTTATGGATGAACAAATAAATTTGTCTTTGCGTGAATTACAAATTGCTAATAGCCTTTTGAAGTTTTGTAAGGATCATGTAAACTCAAATTCTGAAAGGAATGATGGAATTCCAACTACTCGTGAAAGAGGAGAATCAAGTAATGCTGCATCCAAGGGAAATACTCAAGAGAAAGAAAAGGAAAAACAAGTACTTTTTGATCTAAATGAACCAGCTGTTGATGATGAGACCGCTCAAGAGAAAGAAAAGGGAAAACAAGTTCTTATGATTGATCTAAATGAACCAGCTAATGAGGAGGAGGAAGATTAG 579 0.3368 MNQQNIANRCLLCKRLRTNCNINNCEFGMYFPAHRNDDLKCALEVYGLSNIIKFMRSAQPYQRQTTANSFLFEGYAWRIHPTSGLFGYKSFMDEQINLSLRELQIANSLLKFCKDHVNSNSERNDGIPTTRERGESSNAASKGNTQEKEKEKQVLFDLNEPAVDDETAQEKEKGKQVLMIDLNEPANEEEED 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01154 192 MobiDBLite consensus disorder prediction 144 178 - -
Trre15g01154 192 ProSiteProfiles LOB domain profile. 8 110 IPR004883 -
Trre15g01154 192 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Trre15g01154 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 144 - -
Trre15g01154 192 MobiDBLite consensus disorder prediction 120 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01154 Trre-Chr15 8991733 8993072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01154 10 98 AS2 family AT2G19820 40.000 6.17e-14 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre15g01154 LOB 1.3e-16 No_clan