Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01150 ATGCAGTCCGGTGGTGGTGGGCCTGGCCGGACGGCGGGGCGGGCGTCGACATCGTCGGCAGCTGCTTCGCCGTCTTCTTCGTCTTCGGCATCACAGTTAGGGTTTGAATCTTTGCAGCAGCAACAACAGCATCAGCAGCAGCAGATAGGTTCTAGGCAGTCATTTCAACAGCAACTGCTTAGAAAACCTGAAGGGAATGAAGCATTCTTAGCTTATCAAGCAGGGCGTCAAGGTGCATTTGGGAGTAACAACTTCTCACCTCCTAATGCTATGCAAATGCCTCAGCAGTCTCAAAAGTTCATGGGTTTAGGTCAACATGGTTCCAACCAAGATGCCCAGCTCAGAGGTCAAGGTAGCGAGCAGCAGCAAATGTTAAACCCTGTGCAGCAAGCATACCTTCAATATGCTGCTTTCCAGCAGGCTGCGCAACAAAAGCAGCCTGCTTTGGGAATTCATCCGCAGCAGCAAACTAAGATGGGAATGTTAAACCCTGCATCTGTAAAAGATCAGGAAATGCGTAAGGGGAATCTGAAAATGCAGGACATTATGTCAATGCAGGCAATGAATCAAACTCAAGGGTCGTCTTCTAGGAGTTCATCTGAACATGTTTCTCGTGGAGAAAAGCCGATGGAGCAAGGACAGCAGATAAGACCTCTTCAAGCACCGGAAGCACAGCATGGCAACCAAAATGTAATGAACAGCCAGATTGCAGTAGCTGCTCAATTGCAGGCCATGCAGGCATGGGCGCGTGAAAACAATATCGATTTATCACATCCTACAAATGCAAATTTAATGGCAAAGCTCATTCCAATGATGCAGTCAAGGATGGGCATACAACCACCAAAGGCCACTGAGAGCAACATTGGTGCACATTCGTCACCTGTCCCGGTTTCGAAGCAGCAGGTTAATTCTCCAGCAGTTGCAAGTGAGAGCTCAGCACATGCTAATTCATCAAGTGATGTGTCTGGACAGTCAGGTTCTTCGAAAGCCAGACATACTGTTCCCCCCAGCCATCTTGGCTCAACAACAAATGCTGGTCACTCCAGTGACATGGCCATGCAGCAAATCAATGTTCATGGTAGAGAGTCTCAAGCTCCTCTGAGGCAACAAGTAAAACCTGGAAATGGAATGTCCTCTATGCATTCTCAACAATCTTCTGCATCCATGAACTTAGGTGCAGCAGACCATCCTTTGAATGCAAAAGGTGCATCTTCTGGTTCAGAACCTCCTCAAATGCAGTATATTAGGCAGTCAAACCAATCTACTACTCATGTTGGAGCTCCAACAAAAGAAGGGGGTTCAGGAAATTATGCTAAATCTCCAGGGGCACCAGCTCAGATACCTGAGCGGCAAAGTGCATTTACCAAGCAACAGCTACATGTTCTTAAAGCACAGATACTAGCATTTAGGCGGATAAAGAAAGGAGAAGGTACTCTGCCTCAAGAACTTCTTCAGGCTATCACTCCACCGCCTCTTGAGATGCAGGCAAAACAACCAAACCATCCTGCAGGAGGACAAAATCAAGTCAAATCTGCTGGTAATATTGTTGCAGAACAACCACGGCATGCTGAGGCCAATGCCAAAGAATCACAATCTATTTCTGCTGTTAATGGACACAGTTCTGTAAAGCAGGAATCCTTTTCAAGAGATGACAAATCTGCTCCACCATCAGTTGATACTCAAGCTGTTATGCCATATATATCAAAGGAATCTGCTTCGACATCATCTGCAGGAAAGGAAGAGCAGAAAACAATTGGATCCTCTTTTAAGCAAAAGCAGGACACTGAACATGGAAATAACAGTACTCCTGTTAGAAATGAGTTGGCATTAGATAGGGGAAAGGCTATTGTATCACAGGCCCCTGTATCTGACACGCTACAAATTACAAAACCTGCACAAGCTACCCCTGGTCCTCAGCCAAAGGATGTAGGACCGACCAGAAAATATCATGGACCCCTGTTTGATTTTCCTTTCTTCACTAGGAAACATGACTCTTTTGGGTCATCAATGATGGTAAACAACAACAATAATTTATCACTGGCATATGATGTCAAAGACCTTCTTTTTGAGGAAGGTGCAGAAGTACTTAGCAAGAAACGGACAGAAAATTTAAAGAAGATTGAAGGTTTGCTGTCTGTGAACTTGGAGAGGAAACGAATTAGACCTGACCTTGTGTTGAGACTGCAAATTGAAGAGAAAAAGCTCCGCCTCTTAGATGTTCAGGCACGTTTGAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGTAAGTTTGTTAGGCTGTGTGAACGTCAGCGTTTGGAACTTGTTAGGCAAGTGCAGGCATCTCAGAGAGCTGCAAGGGAGAAGCAACTCAAATCTATATTTTTATGGCGTAAGAAACTTCTTGAGGCGCACTGGGCAATTCGTGATGCCCGTACTGCCCGCAACAGGGGGGTGGGTAAATATCATGAGAGGATGTTGCGGGAATTCTCAAAACGTAAAGATGACGATCGAAGCAAAAGGTTGGAAGCCTTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATTCCAGGTGATGCAGCAGAGAGATATGCTGTTCTCTCATCCTTCTTAAGCCAGACCGAAGAGTATCTACATAAATTAGGAAGCAAGATAACAGCTGCAAAAAATCAACAGGAAGTAGAAGAGGCAGCAAAAGCAGCTGCAGATGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCTGCAGCTGCTTGTGCCGGAGAGGAAGTGATGATTAGGAATCGTTTTATGGAGATGAATGCTCCTAGAGACAGTTCATCCGTCAACAAGTATTACAACCTCGCACATGCGGTGAATGAAATGGTCATAAGACCACCATCCCTATTGCGGGCTGGAACATTGAGAGACTATCAGCTTGTTGGATTGCAATGGATGCTTTCTTTGTACAACAACAAATTAAATGGAATTTTGGCAGACGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTCAAAGGAAACTATGGCCCACATCTCATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTATATAAGTGGTTACCATCTGTGTCGTGCATTTTTTATGCTGGAGGGAAGGATTATCGAACAAAGTTATTTCATCAAGTTTCTGCTCTGAAATTTAATGTCTTGGTGACTACTTATGAGTTCATCATGTATGACCGTTCAAAACTTTCAAAAATTGATTGGAAGTATATCGTGATTGATGAAGCACAAAGAATGAAGGATAGAGATTCGGTTTTAGCACGTGATCTTGATAGGTATCGTTGTCAACGACGCCTGCTTTTGACAGGAACACCATTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCCGAGGTTTTTGATAATAAGAAAGCCTTTCATGATTGGTTCTCAAAACCATTTCAAAAGGAAGGTGCTACTCAAAATGCAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTCATCACAATCCATCGACTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGCCGTGTTGAAGATGTTGAAGGATCACTACCACCAAAGGACTCTATAGTTTTACGATGTAAAATGTCATCTGTCCAGAGTGCTATTTATGATTGGGTCAAATCAACTGGTACCCTTCGTCTTGATCCTGAGGATGAGGAACGTAAGCTTCAGAGGAATCCTAACTACCCGGTGAAGCAATATAAAACCTTAAACAACAGATGCATGGAGCTGCGGAAAACTTGCAATCATCCGTTGCTTAATTACCCATTCTTCAGTGACTTATCTAAAGAATTCATCGTAAAATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACTGGACACCGAGTTCTACTTTTCAGTACCATGACAAAACTTCTTGACATCTTGGAAGAATACCTGCAGTGGCGAAGACTTGTGTACAGAAGAATTGATGGGACAACTAGTTTAGAAGACCGTGAATCAGCTATAAATGACTTCAATTCACCTGATTCAGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCCGGGAGAGGCCTTAACCTTCAGTCTGCTGATACAGTTGTTATTTATGATCCTGATCCAAACCCTAAAAATGAGGAGCAGGCTGTTGCAAGAGCTCATCGCATTGGACAGAAAAGACCAGTCAAGGTTATCTACATGGAAGCAGTTGTCGACAAAATCCCTAGTCATCAAAAGGAGGATGAAATGAGAGGTGGAGGCACTGTTGATCTGGATGATGAACTTGTAGGCAAGGATCGCTACATAGGATCTATTGAGGGCCTCATAAGGAACAATATTCAGCAGTATAAGATAGATATGGCTGATGAGGTAATTAATGCTGGACGTTTTGATCAAAGAACAACACATGAAGAAAGGCGGTTGACTTTGGAGACATTATTACATGATGAAGAGAGGTATCAAGAAACTGTCCATGATGTTCCATCACTGCAGGAGGTAAATCGCATGATTGCTAGGAGTGAAGAGGAAGTTGAACTATTTGATCAAATGGATGATGAACTGGATTGGATTGATGAGATGACACGTTACGATCACATCCCTAAATGGATTCGTGCCAATACAAAAGAAGTTAATGCTGCTATTGCTGCTTTATCAAAAAGACCATTAAAGACAGCTTTATTGGGTGGCAGTGTTGGCATGGAAACAAGTGAACTTGGTTCAGAACGGAAAAGAGGGAGACCCAAAAAGCATACTAGTTATAAAGAGCTGGAAGATGAAGATTTGGAATACTCTGAAGCAAGCTCTGAAGAAAGAAATGGATATGCAAATGAAGAAGGGGAAATAGGAGATTTTGAAGATGATGGGTATAGTGGAGCTGATGGAGCTCAGCCCATTGCTAAAGATCAGCTGGAAGATGGTAGATATGAATTTCCTCCATCTTTAGAAATCGTCAATAATCAGGTGGTTCAAGAAGCTGGTTCTTCTGGCTCTGGGTCGTCCGCAGACTGTCAAAAATTGAAACAGATAGTATCACCATCAATTTCCTCTCAGAAATTTGGTTCTTTGTCTGCATTAGATGCCCGACCAGGTTCTGCTTCAAAAAGGATGACGGATGACTTAGAGGAAGGGGAAATTGCAGTATCCGTTGATTCCCACATGGAGCATCAGCAGTCTGAAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAACAAGTTCTGCAGAAACCAAAGATTAAACGCAAACGTAGTCTTCGTGTTCGACCCCGTCATGCCACTGAAAGACCTGAAGAAAAGTCTGGTGGTGAAATGACACCTCGTTTGTCAGTTCTAGCAGACCGTAAATATCAAGCACAGCTGAGGACTGACCTAGAATCAAAATCACGCCTAGATTCTAATGCCAGCAGGAATGATCAAAATTCTTCAATAAAAAATAAGCGAACTTTACCTTCAAGGAGGGTTGCTAATACATCCAAATTACATGGCTCACCAAAGCCTACTCGTTTGAATAGCATATCTGCTCCTTCAGAGGATGGTGGTGAATATTCCCGGGAGAGCTGGGACGGGAAGCCTATCAATTCAAGTGGATCTTCTGCTCATGGCTCTAGGATGACAGAAATCATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTCCAAAGGAGGATAGACAAGGAAGGCCAACAAATTGTACCTCTATTAACAGATTTGTGGAAGAGGATCGAGAATTCTGGCTACAGTGGTGGGTCTGGGAATAGTCTGTTGGATTTACGAAAGATTGATCAGCGGATTGATAAATTGGAGTATAATGGAGCAACAGATCTTGTATCTGATGTGCAGCTCATGTTAAAGAGTGCGATGCATTATTATGGTTTTTCCCTTGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTCGATATATTGAAAATTGCATTTCCCGATACCGACTTCCGAGATGCAAGAAGTGCACTCTCTTTCACTGGTCCAATTTCTGTCACCACCAATGTATCGTCTCCCAGGCAAGTAGCTGGCCAAGGCAAACGGCACAGGCTGATAAACGAGGTGGATACCGATCCACACCCTCCACAGAGACCACTGCAGCGCGGATCAGGTTCTAGTGGCGAAAACAGCAGGATTAGAGTCCGTGTGCCACCAAAAGAATCAAGATCCGGATATGGTAGCGGTAGCAGCATGCGAGAGCAACCTCAGGAGCAGGATGATTCTCCTCCACTGCTCACTCATCCAGGCGAACTTGTTGTATGCAAGAAAAGAAGAAATGATCGGGAAAAATCATTGGCCAAACCTCGGACTGGTCCTGTTTCACCATCTATGAGAAGTCCCGGGGCAGGTTCAGTCCCTAAAGATGTTCGATTATCTCAACAGTCTCAAGGATGGGTTGGGCAACCATCTTCTCAACAACCAAATGGGTCAGTTGGATGGGCAAATCCTGTAAAGAGACTAAGAACAGATTCTGGTAAGAGGAGACCAAGTCATATGTAA 6597 0.4361 MQSGGGGPGRTAGRASTSSAAASPSSSSSASQLGFESLQQQQQHQQQQIGSRQSFQQQLLRKPEGNEAFLAYQAGRQGAFGSNNFSPPNAMQMPQQSQKFMGLGQHGSNQDAQLRGQGSEQQQMLNPVQQAYLQYAAFQQAAQQKQPALGIHPQQQTKMGMLNPASVKDQEMRKGNLKMQDIMSMQAMNQTQGSSSRSSSEHVSRGEKPMEQGQQIRPLQAPEAQHGNQNVMNSQIAVAAQLQAMQAWARENNIDLSHPTNANLMAKLIPMMQSRMGIQPPKATESNIGAHSSPVPVSKQQVNSPAVASESSAHANSSSDVSGQSGSSKARHTVPPSHLGSTTNAGHSSDMAMQQINVHGRESQAPLRQQVKPGNGMSSMHSQQSSASMNLGAADHPLNAKGASSGSEPPQMQYIRQSNQSTTHVGAPTKEGGSGNYAKSPGAPAQIPERQSAFTKQQLHVLKAQILAFRRIKKGEGTLPQELLQAITPPPLEMQAKQPNHPAGGQNQVKSAGNIVAEQPRHAEANAKESQSISAVNGHSSVKQESFSRDDKSAPPSVDTQAVMPYISKESASTSSAGKEEQKTIGSSFKQKQDTEHGNNSTPVRNELALDRGKAIVSQAPVSDTLQITKPAQATPGPQPKDVGPTRKYHGPLFDFPFFTRKHDSFGSSMMVNNNNNLSLAYDVKDLLFEEGAEVLSKKRTENLKKIEGLLSVNLERKRIRPDLVLRLQIEEKKLRLLDVQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRLELVRQVQASQRAAREKQLKSIFLWRKKLLEAHWAIRDARTARNRGVGKYHERMLREFSKRKDDDRSKRLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSSFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAADAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPRDSSSVNKYYNLAHAVNEMVIRPPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYKWLPSVSCIFYAGGKDYRTKLFHQVSALKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGATQNAEDDWLETEKKVITIHRLHQILEPFMLRRRVEDVEGSLPPKDSIVLRCKMSSVQSAIYDWVKSTGTLRLDPEDEERKLQRNPNYPVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAINDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKRPVKVIYMEAVVDKIPSHQKEDEMRGGGTVDLDDELVGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIDEMTRYDHIPKWIRANTKEVNAAIAALSKRPLKTALLGGSVGMETSELGSERKRGRPKKHTSYKELEDEDLEYSEASSEERNGYANEEGEIGDFEDDGYSGADGAQPIAKDQLEDGRYEFPPSLEIVNNQVVQEAGSSGSGSSADCQKLKQIVSPSISSQKFGSLSALDARPGSASKRMTDDLEEGEIAVSVDSHMEHQQSESWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATERPEEKSGGEMTPRLSVLADRKYQAQLRTDLESKSRLDSNASRNDQNSSIKNKRTLPSRRVANTSKLHGSPKPTRLNSISAPSEDGGEYSRESWDGKPINSSGSSAHGSRMTEIIQRRCKNVISKLQRRIDKEGQQIVPLLTDLWKRIENSGYSGGSGNSLLDLRKIDQRIDKLEYNGATDLVSDVQLMLKSAMHYYGFSLEVRTEARKVHDLFFDILKIAFPDTDFRDARSALSFTGPISVTTNVSSPRQVAGQGKRHRLINEVDTDPHPPQRPLQRGSGSSGENSRIRVRVPPKESRSGYGSGSSMREQPQEQDDSPPLLTHPGELVVCKKRRNDREKSLAKPRTGPVSPSMRSPGAGSVPKDVRLSQQSQGWVGQPSSQQPNGSVGWANPVKRLRTDSGKRRPSHM 2198
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01150 2198 MobiDBLite consensus disorder prediction 101 122 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 2154 2178 - -
Trre15g01150 2198 CDD SF2_C_SNF 1299 1430 - -
Trre15g01150 2198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 964 1209 IPR027417 -
Trre15g01150 2198 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 992 1156 IPR014001 -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 521 604 - -
Trre15g01150 2198 Coils Coil 734 754 - -
Trre15g01150 2198 ProSiteProfiles QLQ domain profile. 453 489 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g01150 2198 FunFam ATP-dependent helicase BRM 971 1218 - -
Trre15g01150 2198 PANTHER SNF2/RAD54 HELICASE FAMILY 692 1725 - -
Trre15g01150 2198 FunFam ATP-dependent helicase BRM 1219 1429 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 620 634 - -
Trre15g01150 2198 SUPERFAMILY Bromodomain 1951 2013 IPR036427 GO:0005515
Trre15g01150 2198 MobiDBLite consensus disorder prediction 1 61 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 620 644 - -
Trre15g01150 2198 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1310 1487 IPR001650 -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 278 347 - -
Trre15g01150 2198 FunFam Brahma1 1899 2022 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 361 392 - -
Trre15g01150 2198 SMART bromo_6 1897 2012 IPR001487 GO:0005515
Trre15g01150 2198 Gene3D - 1219 1429 IPR027417 -
Trre15g01150 2198 Gene3D - 972 1218 IPR038718 -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 526 543 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 1819 1900 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 1597 1659 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 564 604 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 279 347 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 1728 1745 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 404 429 - -
Trre15g01150 2198 Pfam QLQ 453 487 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g01150 2198 MobiDBLite consensus disorder prediction 1600 1620 - -
Trre15g01150 2198 SMART ultradead3 976 1164 IPR014001 -
Trre15g01150 2198 Pfam Helicase conserved C-terminal domain 1309 1420 IPR001650 -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 1829 1873 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 1884 1900 - -
Trre15g01150 2198 SMART helicmild6 1336 1420 IPR001650 -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 2034 2198 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 2089 2107 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 2117 2133 - -
Trre15g01150 2198 SMART QLQ_2 452 489 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre15g01150 2198 Gene3D - 1899 2023 IPR036427 GO:0005515
Trre15g01150 2198 MobiDBLite consensus disorder prediction 1 62 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 361 448 - -
Trre15g01150 2198 CDD Bromodomain 1952 2007 - -
Trre15g01150 2198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1213 1550 IPR027417 -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 1713 1806 - -
Trre15g01150 2198 Pfam SNF2-related domain 983 1286 IPR000330 GO:0005524|GO:0140658
Trre15g01150 2198 MobiDBLite consensus disorder prediction 1752 1774 - -
Trre15g01150 2198 Coils Coil 1526 1546 - -
Trre15g01150 2198 MobiDBLite consensus disorder prediction 187 218 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre15g01150 Trre-Chr15 8948580 8963810 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01150 1001 1445 RAD5 or RAD16-like Gene Family AT1G02670 26.104 4.29e-29 124
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre15g01150 SNF2_N 4e-64 CL0023
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01150 - - gmx:100807104 3341.59