Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01145 ATGTCACTCATTTTCATTTTCCTTTTTTTTCTCTTATCTCATTTCACTTCTTCTTCACCCATCAACAGCAACAACTCCAATGTCATTCTTTTATCATCAAACCAAACCCTCTTCAGCCAAAATCAAACCTTTCAACTTTGTTTCTTAAATTTACAAAACCAAAACCAACAACAACCTCGTTATTATCTAGTTATCCGTTTCACTTCTCTTCCTTCTCCAAACATCATTTGGGTCGCAAACCGTAACAAACCCATTTCATCTCTTTCCGGTTCAGTTCTTCAATTAACTCAAACCGGTCAATTACTACTCCTCACTCAAAACGCCGTCGTTTTATGGCAAACCAAAACCCATTTCAGCACAAACAACAACAACACCTTACTCCAACCTAAGCTTTTAGAAAATGGTAACTTCATTGTTCTTAATCAAAACGGTGTCGTTTTATGGCAAAGTTTTGATGAACCAAGTGACACGTGGCTACCAGGTATGAATCTAACTAGGGTTCATAATTTACTTTCATGGAGAACTTTAACAAACCCTGGTAATGGTTTTTATTCATTAAAGTTGGAACCACCGAATTATGGTCAATTTGAGTTGGTTTACAATGAAACTGTTTCTTATTGGTCTACTGGTAATTGGACTGGTGGTTCATTTAGTGATGTTCCTGAGATGATGATTCCTTATCTTTATCGGTTTGATTTTAAAGATGCGTTTTTGCCGACTGCGTCGTTTGGATTCTCCGAACGGGCGATGGATAATGGTGTTAGACCGCCTACGATGTTTCGTGTTGAGCCGTTTGGTCAGATTCGGCAGTATACTTGGTCGAATCAAGCTGGTTCGTGGAATATGTTTTGGTCGAGGCCTGAATCGATTTGTTCGGTTCGGGGTGTTTGTGGGAGGTTTGGTGTTTGTACGGGTGATATGTCGAGGCTTTGTGAGTGTGTTAAGGGTTTTGTGGCGGTGGATGGTGGTGGTTGGAGTTCGGGTGATTATTCGGAAGGTTGTTGGAGAGGGGAGAAGGTTTGTGATGAAAATGATGGTTTTGAAAATTTGGGTGTTGTTAGTTTTGGTTTCGATAATGTGAGTACTTTTAGTGCTAAATCTAGAAGCTTGTGTGAGAGTGGTTGTTTGGGTTCTTGTGATTGTGTTGGTTTGTCTTTTGATGAAAAGAGTGGCTTTTGTAAGAATTATTTTGGGTCTCTTTTTGATTTTCAAAATTTAACTGCTTTGGAGAGTGGTGGTGGTGGTGGTAATGGTGACAGGAATGTGTTGTATGTTAGGGTTCCTGGCGGTGGGGTTGAAGGGAAGATTAAGAGGTTGAGTGGTAAGGTTTTGAGTGGTATTGTAATTGGGTGTGTTTTGTTTTTGGTTTTGGGTGTGGTGGTGGTGACTTTGATGGTGTTGGTAAAGAGGAAGAGATTGAAGGAGAAGGAGAACGGGTTGGAGGATGATGGGTTTGTTCCTATTTTGAATTTGAAGGTGTTTTCTTACAAGGAGCTTCAATTGGCGACTCGAGGGTTTTCTGAGAAAGTTGGGCATGGTGGGTTTGGGACGGTGTTTCAAGGGGAGTTGAATGATTCTACGGTTGTTGCGGTGAAGCGTTTGGAGAGGCCCGGAGGTGGGGAGAAAGAGTTTAGGGCCGAGGTTTCAACGATTGGGAACATTCAACATGTTAATCTTGTGCGGCTAAGAGGATTTTGCTCTGAGAATGCACATCGACTTTTGGTTTATGAGTACATGCCGAATGGTGCCCTTTGCGCTTATCTGCGAAAGGATGGGCCGTGTTTGAGTTGGGATGTTAGGTTCAGAGTGGCGATTGGAACTGCTAAAGGCATAGCGTATTTGCACGAGGAATGTAGAAGTTGCATTATACATTGTGATATCAAACCTGAAAACATTCTTTTGGATGCTGATTTCACTGCCAAGGTTTCTGATTTTGGATTGGCAAAGCTCATTGGCAGGGATTTCAGTAGGGTTTTGGCAACCATGAGGGGTACTTGGGGATATGTAGCGCCGGAGTGGATTTCTGGCGTTGAAATTACAACTAAAGCTGATGTTTACAGCTATGGAATGACATTGCTAGAACTAGTAAGCGGTCGTCGGAATGTGGAGGCACCACCTTCGTCTGGTGATAGAAAGAGTGGTTGTGAGACAGAGGAGAAATGGTTCTTTCCTCCGTGGGCAGCACAGCTGATAATCGAGGATAACGTAGCTGCTGTGGTTGATAAGAAGCTTGGAAATGTATATAACATTGAGGAGGCCAAGAGAGTTGCGTTGGTAGCAGTTTGGTGCATTCAGGACGATGAGGCAATGAGACCTACCATGGGTATGGTGGTGAAAATGTTAGAAGGATTAGTGGAGGTGGCTCTTCCACCGCCGCCTAAGTTGCTACAAGCATTGGTTGCCGGAGAGTCCTTTCACGGTGTCAAGGCTGATTCGAGTAATGCAGTTTCAACTGTTGGCAGTTCATCTGCCGACGACAACATGGAAGTGTCGGCTGCTGATTCAGAATCATGTATAGGAGATGTTTTTTCACAGTTGGATTGCATTGTCAATGTTCGATAA 2562 0.4282 MSLIFIFLFFLLSHFTSSSPINSNNSNVILLSSNQTLFSQNQTFQLCFLNLQNQNQQQPRYYLVIRFTSLPSPNIIWVANRNKPISSLSGSVLQLTQTGQLLLLTQNAVVLWQTKTHFSTNNNNTLLQPKLLENGNFIVLNQNGVVLWQSFDEPSDTWLPGMNLTRVHNLLSWRTLTNPGNGFYSLKLEPPNYGQFELVYNETVSYWSTGNWTGGSFSDVPEMMIPYLYRFDFKDAFLPTASFGFSERAMDNGVRPPTMFRVEPFGQIRQYTWSNQAGSWNMFWSRPESICSVRGVCGRFGVCTGDMSRLCECVKGFVAVDGGGWSSGDYSEGCWRGEKVCDENDGFENLGVVSFGFDNVSTFSAKSRSLCESGCLGSCDCVGLSFDEKSGFCKNYFGSLFDFQNLTALESGGGGGNGDRNVLYVRVPGGGVEGKIKRLSGKVLSGIVIGCVLFLVLGVVVVTLMVLVKRKRLKEKENGLEDDGFVPILNLKVFSYKELQLATRGFSEKVGHGGFGTVFQGELNDSTVVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENAHRLLVYEYMPNGALCAYLRKDGPCLSWDVRFRVAIGTAKGIAYLHEECRSCIIHCDIKPENILLDADFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVEITTKADVYSYGMTLLELVSGRRNVEAPPSSGDRKSGCETEEKWFFPPWAAQLIIEDNVAAVVDKKLGNVYNIEEAKRVALVAVWCIQDDEAMRPTMGMVVKMLEGLVEVALPPPPKLLQALVAGESFHGVKADSSNAVSTVGSSSADDNMEVSAADSESCIGDVFSQLDCIVNVR 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01145 853 PIRSF SRK 1 836 IPR024171 GO:0004674
Trre15g01145 853 Gene3D Transferase(Phosphotransferase) domain 1 579 788 - -
Trre15g01145 853 CDD STKc_IRAK 510 784 - -
Trre15g01145 853 Gene3D Phosphorylase Kinase; domain 1 469 578 - -
Trre15g01145 853 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Trre15g01145 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Trre15g01145 853 PANTHER OS07G0415500 PROTEIN 4 794 - -
Trre15g01145 853 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 212 IPR036426 -
Trre15g01145 853 SMART serkin_6 504 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01145 853 Pfam Protein kinase domain 507 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01145 853 ProSiteProfiles Protein kinase domain profile. 504 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01145 853 FunFam S-receptor-like kinase 5 579 790 - -
Trre15g01145 853 ProSiteProfiles Bulb-type lectin domain profile. 22 152 IPR001480 -
Trre15g01145 853 ProSitePatterns Protein kinases ATP-binding region signature. 510 532 IPR017441 GO:0005524
Trre15g01145 853 SMART blect_4 28 154 IPR001480 -
Trre15g01145 853 Pfam D-mannose binding lectin 75 167 IPR001480 -
Trre15g01145 853 Gene3D - 21 151 IPR036426 -
Trre15g01145 853 Pfam S-locus glycoprotein domain 207 319 IPR000858 GO:0048544
Trre15g01145 853 FunFam Receptor-like protein kinase 4 466 578 - -
Trre15g01145 853 SUPERFAMILY Protein kinase-like (PK-like) 488 782 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01145 Trre-Chr15 8873705 8876266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01145 494 791 Receptor kinase-like Gene Family AT5G20050 46.624 1.17e-80 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre15g01145 Pkinase 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01145 - - lja:Lj0g3v0252549.1 1157.13