Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01144 ATGGGAGGTTGTTGTTGCTCTGCCAGAAAACCTCATCTGCATGGGCCTCCGGTGTATTACTATTGTCCACCGATTTTAGAAGAGCGCGATGCTTTAACCTCTACTGATGGTGCGACCGATTCACTCACTGCTGGATTGCTGGTAGGCTTGAACGTGGAAGAATCCACACCTGATACTTACCAGTCTCCTCCTGCACCTCTGCCTTATGATGTGGTTTTGGGAGGTACAGCTTCGACAGACTCTGAGTCAGGAAGAGACACTGTTGTTAGTGGTAGTAGTTTTGAAACTTTAATTACATGTGAAGATATTGAAGAATCTGACCCTAAAGCTCAAGCTAAATCTGCACCAATATCTCCAAGCAAGGCAGAACTGTGGAAATCAAGTGAACCTCATGCATTGGTGATAGAAGAAGAGGATGGCTGTCCAATTTGCCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTAACAAAATGTGAACACCACTTTCACCTGGCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCTTGTCCTATATGTGATCAGGAGATGATATTTGATGAGGCACTGGACTAG 579 0.4404 MGGCCCSARKPHLHGPPVYYYCPPILEERDALTSTDGATDSLTAGLLVGLNVEESTPDTYQSPPAPLPYDVVLGGTASTDSESGRDTVVSGSSFETLITCEDIEESDPKAQAKSAPISPSKAELWKSSEPHALVIEEEDGCPICLEEYDVENPKTLTKCEHHFHLACILEWMERSDSCPICDQEMIFDEALD 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01144 192 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Trre15g01144 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 190 IPR013083 -
Trre15g01144 192 SUPERFAMILY RING/U-box 133 188 - -
Trre15g01144 192 SMART ring_2 141 181 IPR001841 -
Trre15g01144 192 Pfam Ring finger domain 141 181 IPR001841 -
Trre15g01144 192 FunFam Putative E3 ubiquitin-protein ligase RHB1A 117 186 - -
Trre15g01144 192 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 38 189 - -
Trre15g01144 192 CDD RING-H2_AIRP1-like 137 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01144 Trre-Chr15 8864610 8867162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01144 1 192 C3H Transcription Factor Family AT4G00335 56.771 4.35e-71 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01144 - - tpra:123885727 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02514 13 22951818 22953484 Trre15g01144 15 8864610 8867162 PCT