Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01138 ATGGGTTTTCCGGTTGGTTACGCCGAAGTATTCTTCCCAAACTTATTCCTTCACACTTTAACTCTCCTCGGACTTCTCCGAAACCTGGTCTTCTTCCTCTTCCACTTCCTCGGACTCTCCGATTTCCTCGAAACTGACACTGTCTGGCCTCAAAACGGAGAAGCCAATCAAACACAAGAACCTTCCAAGACACCCTCCGTGTCGGCGGTTCTGATCCGGGAACTTTTACCGGCGACAAAGTACGGTGACCTTGCCGGCGGCGTTGAAGAAGGTTGTTGCTGTGCTGTTTGTTTGTTTGAATTCTCCGAGGAAGAAGAGATCCGGTGTTTGAGAAACTGTCGACATATTTTCCATCGAAATTGTGTTGACCGTTGGATTGATCTTGATATGAAAACGTGTCCTCTTTGTAGAACTGGTTTTGTTCCTGATGATATGATTGATGATTATAATCAACGGTTATGGGTTGCTTCTGGTGTTAGTGAGTTTTATAGTTATGCAGATTATACTTCTTCTTTTTAA 519 0.4412 MGFPVGYAEVFFPNLFLHTLTLLGLLRNLVFFLFHFLGLSDFLETDTVWPQNGEANQTQEPSKTPSVSAVLIRELLPATKYGDLAGGVEEGCCCAVCLFEFSEEEEIRCLRNCRHIFHRNCVDRWIDLDMKTCPLCRTGFVPDDMIDDYNQRLWVASGVSEFYSYADYTSSF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01138 172 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Trre15g01138 172 SMART ring_2 94 136 IPR001841 -
Trre15g01138 172 SUPERFAMILY RING/U-box 93 145 - -
Trre15g01138 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 141 IPR013083 -
Trre15g01138 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 147 - -
Trre15g01138 172 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01138 Trre-Chr15 8814789 8815307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01138 1 159 C3H Transcription Factor Family AT1G63840 45.732 5.30e-47 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01138 K16281 - gmx:100500261 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02507 13 22842594 22843124 Trre15g01138 15 8814789 8815307 PCT