Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01132 ATGGCTGCTCTTAGGTTTTCTCATGTCAAATGTCTACATAGTTCAATCAAAGGATTTTTCAATTTCCAAAATGTTCATAATTACCACCGTAAACCTAATAGGATTTCGAATCTTGCAAGAATTTCAAGTTCTTGTATTGATTTGTCGAACCGTCATTATTCCAAAGGAGAGTTAAAATTAGATAAGATGTCTGCTCAAAACCAGTTTAGCAAGCTGGGTTATAGGGATTTCAATGCTGCATTTGATTCTAGATTCTCGAGGGTATGTTTCCGAAGAAGTGTTGTTATTGTTCCTTTTACTTCGATGACTAGTGCGTTGAGTGTGCGAATGTATTCGTCGTCTTTGGGTGGAAAAGGAAGTAGTGATGGTGAAACAGAAGTGGGTACTGGGTCTGGTGTGAGTGATATGAATGGTAGTGGCGATTCAGTTGTTTCGGGTGATTTGGTTGAGAGGATGAAAGATACGTGGAAGAGTGTCGTAGAGGCAGCTTCATATGCTGGGGAAAAGGTTAAAGAAGGTTCTGATGGTCTTACACCATATGCTCAACAGTTTCTTGATTCACATCCTTATCTAAACATGGTGGTTGTTCCGGTTGGTGGTACTTTAACTGCTACTCTAGTAGGTTGGTTCATCTTGCCAAGAATTTTAAGGAAATTTCACAGATATGGAATGCAAAGTCCTATTTCTCTATTTCAAGGAAGTGTGTCTGAGGAGTCGGTTCCATATGAGAAAAGCTTTTGGGGTGCTATGGAAGATCCTGTGCGATATTTAGTTACCTTCTTAGCATTCTCACAAATTGCTGTAATGGTAGCTCCAACGGCTATAGCCTCGCAATATCTTGCACCCACTTGGAGGGGTGCAATGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGTGCGGACGCTTTCTAGTCAAAGTGTACTTGGACTTGATAGGGAGAAAATGCTTGCTCTAGACAAAATCTCATCCATTGGTCTATTTGTTATTGGTACAATGGCTTTGGCTGAGGCATGTGGTGTGGCTGTGCAATCTATTATAACAGTTGGTGGTGTAGGAGGAGTTGCTACTGCTTTTGCTGCTAGAGATGTACTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCAAAACCATTTTCAATTGGAGATACAATAAAAGCTGGATCGATAGAGGGTCAAGTGGTGGAAATTGGTCTCACCAGCACATCATTGCTGAGTCCAGAGAAGTTTCCAGTCATTGTGCCGAACTCATTTTTTTCTAGCCAGGTAATTGTGAATAAGTCTCGTGCCGATTATCGTGCCATTATTACAAAAATTCCTCTGCAAGTTGAGGATTTAAGTAAGATTCCCCAGTTATCAAATGATATAAACAACATGTTAACATCGAATGGAAAAGTGTTCTTAGGAAAAGATGTTCCGTACTGTTTCTTATCACGTATAGAAAGTTCGTTTGCAGAACTGACTCTTGGATACAACCTCAAGAACATGCGCAAACATGAGTTCTACTCTGCAGAACAAGATATTCTCCTGCAAACAGTTCAGATCATTAAGAATCACGGTGTAGCTCTTGGCAACACATGGAATGATGCTAAGTAG 1614 0.3984 MAALRFSHVKCLHSSIKGFFNFQNVHNYHRKPNRISNLARISSSCIDLSNRHYSKGELKLDKMSAQNQFSKLGYRDFNAAFDSRFSRVCFRRSVVIVPFTSMTSALSVRMYSSSLGGKGSSDGETEVGTGSGVSDMNGSGDSVVSGDLVERMKDTWKSVVEAASYAGEKVKEGSDGLTPYAQQFLDSHPYLNMVVVPVGGTLTATLVGWFILPRILRKFHRYGMQSPISLFQGSVSEESVPYEKSFWGAMEDPVRYLVTFLAFSQIAVMVAPTAIASQYLAPTWRGAMILSFVWFLHRWKTNVFVRTLSSQSVLGLDREKMLALDKISSIGLFVIGTMALAEACGVAVQSIITVGGVGGVATAFAARDVLGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEIGLTSTSLLSPEKFPVIVPNSFFSSQVIVNKSRADYRAIITKIPLQVEDLSKIPQLSNDINNMLTSNGKVFLGKDVPYCFLSRIESSFAELTLGYNLKNMRKHEFYSAEQDILLQTVQIIKNHGVALGNTWNDAK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01132 537 Gene3D - 284 383 - -
Trre15g01132 537 Pfam Mechanosensitive ion channel 326 528 IPR006685 GO:0016020|GO:0055085
Trre15g01132 537 Gene3D - 384 432 IPR023408 -
Trre15g01132 537 SUPERFAMILY Sm-like ribonucleoproteins 368 433 IPR010920 -
Trre15g01132 537 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 149 531 - -
Trre15g01132 537 MobiDBLite consensus disorder prediction 115 140 - -
Trre15g01132 537 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 283 367 IPR011014 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01132 Trre-Chr15 8776552 8780782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01132 149 536 Mechanosensitive Ion Channel Family AT4G00290 66.495 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01132 K22047 - gmx:100789047 729.554