Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01123 ATGATAGCAGATACCGGCGATTTCGCCGGCACCATTTGTTCAATTTGCTACGAAGGTCTCAACCCCATTACCGAAGATCTTCAATCAGTTTCCATCTGCGGCCATGTCTTTCACGAGCTCTGTTTGCAGCAATGGTTCGAGTATTGTGCGTCGAAGAAGCATACTTGCCCCGTCTGCAAGGCGATTGGAGATGTGAAGGAATCTGTTGTTACTCAGAAGCAAATTGGTGTTGAAGAAGATGCCGGTGTTTTGCGAAAAGAAGTTAAGAGATTGGAGGGTAAAGTTTCTGGGCTTAGTACTGTTTTGAAAAAACAAACTAAGGAATTAGATGAACTCAAAGATGAGGGTGTTTGA 354 0.4379 MIADTGDFAGTICSICYEGLNPITEDLQSVSICGHVFHELCLQQWFEYCASKKHTCPVCKAIGDVKESVVTQKQIGVEEDAGVLRKEVKRLEGKVSGLSTVLKKQTKELDELKDEGV 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01123 117 CDD RING-H2 13 60 - -
Trre15g01123 117 ProSiteProfiles Zinc finger RING-type profile. 13 60 IPR001841 -
Trre15g01123 117 Coils Coil 95 115 - -
Trre15g01123 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 94 IPR013083 -
Trre15g01123 117 PANTHER RING ZINC FINGER PROTEIN-RELATED 4 115 - -
Trre15g01123 117 SMART ring_2 13 59 IPR001841 -
Trre15g01123 117 SUPERFAMILY RING/U-box 11 64 - -
Trre15g01123 117 SMART ringv_2 12 60 IPR011016 GO:0008270
Trre15g01123 117 Pfam Ring finger domain 12 60 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01123 Trre-Chr15 8715412 8717546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01123 2 115 C3H Transcription Factor Family AT4G01270 48.062 7.30e-36 126