Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01115 ATGGTATCAGTGAACCCTAATCCAGCACAAGGTTTCCATTTCTTCGATCCTTCTTCAAACATGGGTCTTCCTGGTGTCAACAATCTTCCGCCGCCACAGCCGCAACCTACTAGCACCGCAGCTACTGAGGATCCGAATAAGAAGATCCGAAAACCCTACACGATTACCAAATCTAGAGAGAGTTGGACTGATCAGGAACATGAGAAGTTTCTAGAAGCTCTTCAATTATTCGATCGTGACTGGAAGAAGATTGAAGCCTTTGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAGAAGTATTTTCTCAAAGTTCAGAAGAGTGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCCAAAAATGCTCCTGCTGCATCCCAAGTCATGGGGCCATTGCAATCTTCACCTGCTTTTGTTGACCCAGCATACATTTATAGCACAGAATCATCATCTGTGCTTGGAACTCCAGTTACTAATATGCCTTTATCATCTTGGAATCATAATGCTGCACCACCAGCCAGCGTGCCACAAGTGACTACAGATGACACGGGATGGACTGGATATGGACAAGCTGTTCCTCTTAATTGTTGCTATAGCAGCAGTAATGAGAGCGCTCGCGCAGCTGGGCCAAGTAGTAAAGGGATCAATCAAGGCAATGTGGGCAAGCCAGTTAAAGTCATGCCAGATTTTGCACAAGTATACAACTTCATTGGCAGTGTATTTGATCCAAATTCAACTAATCACCTACAGAGACTAAAGCAGATGGACCCCATAAATGTTGAAACGGCACTGCTGTTGATGAGAAACCTCTCCATTAATTTAACTAGTCCTGAATTTGAGGATCATAAGAGGCTACTGTCATCATATGATCCTGACTGTGAGAAGGCAAAGTTTGCTAATCCAAGTAGCAAATCCGTGACTGTTAAATCTGAAAATGCTGTTCTGTCTACTTAG 999 0.4374 MVSVNPNPAQGFHFFDPSSNMGLPGVNNLPPPQPQPTSTAATEDPNKKIRKPYTITKSRESWTDQEHEKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKNAPAASQVMGPLQSSPAFVDPAYIYSTESSSVLGTPVTNMPLSSWNHNAAPPASVPQVTTDDTGWTGYGQAVPLNCCYSSSNESARAAGPSSKGINQGNVGKPVKVMPDFAQVYNFIGSVFDPNSTNHLQRLKQMDPINVETALLLMRNLSINLTSPEFEDHKRLLSSYDPDCEKAKFANPSSKSVTVKSENAVLST 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01115 332 CDD SANT 61 104 IPR001005 -
Trre15g01115 332 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Trre15g01115 332 PANTHER SWI/SNF COMPLEX-RELATED 33 290 - -
Trre15g01115 332 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Trre15g01115 332 SUPERFAMILY Homeodomain-like 53 109 IPR009057 -
Trre15g01115 332 SMART sant 58 106 IPR001005 -
Trre15g01115 332 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Trre15g01115 332 Gene3D - 62 109 - -
Trre15g01115 332 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Trre15g01115 332 MobiDBLite consensus disorder prediction 109 144 - -
Trre15g01115 332 MobiDBLite consensus disorder prediction 44 60 - -
Trre15g01115 332 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Trre15g01115 332 MobiDBLite consensus disorder prediction 1 60 - -
Trre15g01115 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01115 Trre-Chr15 8633786 8639622 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g01115 Myb_DNA-binding 5.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01115 - - gmx:778090 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01115 15 8633786 8639622 Trre15g01115 15 8633786 8639622 ECH