LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g01109	ATGGAGGAAGATTGGGATCTATTTGCAGTAGTTAGACCCTACACCACCATCACCTCTGGCTCTTCCTCCTCCACCACCACAACAGCCACCTCGTCTACACCTTCTTCATCTGGTTTTGAAACTTCAACATCTTGCAACTTCTTCTCTCTATATCCTACAGAAAATTCAAGTCAAGTTTTGTCACTTTCAAACCCCTTGGAACCAAAAAAACCCATTGAAGAATTGCATGATCTTTGTAAACCTTTCTTCCTTAAACCACAACATCTCTCTTCTAATTCATTCTCTTATTCATCACCATCACCAAAATCACCTCACATACAACCAAAACAACAACAAATTAATAAGAACTCTCACCATGTTGTCTCTGCTACAACCCCAAGATCTAAAAGAAGAAAGATTCAACATAAGAAGGTATGTGAAGTGCAAGCTGAGAATCTCTCATCAGATATATGGGCATGGAGGAAATATGGTCAAAAACCCATCAAAGGGTCACCATATCCAAGAGGATATTATCGATGTAGTAGTTCAAAAGGGTGTTTAGCTAGAAAACAAGTTGAGAGGAACAAATCAGACCCAACAATGTTCATAGTAACGTACACCGGTGAACATAGTCACCCTGCTCCAACGCATAGAAATTCTCTTGCTGGTTCAACAAGGCAGAAGCCATTGTCACCACAAATTGTCACCGCTGATGACTCTTCTCAACCCTTTGCAAAACAAGTTTCTCCATCTACTTCAGGAGCTGAAGAGGAAAATACTACACCCTTAAGTGCAAAATCAGATAGCAAGGATTTGGAAGATTTGATGAATGATGATGATGATGATGTGGAAAATGAATTTGAGTTATCTGATATGGTTGTAACAGATGATTTCTTTGAAGGTTTAGATGAATTGACAGGTTTTGCAGGAAAAACAGTAGCATCTAATGGTGATTGTTTTGGTGATCCATTTGCAGCTAGTATTGCACTGCCTGCTTGTGGTGGCCAATGA	990	0.396	MEEDWDLFAVVRPYTTITSGSSSSTTTTATSSTPSSSGFETSTSCNFFSLYPTENSSQVLSLSNPLEPKKPIEELHDLCKPFFLKPQHLSSNSFSYSSPSPKSPHIQPKQQQINKNSHHVVSATTPRSKRRKIQHKKVCEVQAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKSDPTMFIVTYTGEHSHPAPTHRNSLAGSTRQKPLSPQIVTADDSSQPFAKQVSPSTSGAEEENTTPLSAKSDSKDLEDLMNDDDDDVENEFELSDMVVTDDFFEGLDELTGFAGKTVASNGDCFGDPFAASIALPACGGQ	329

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g01109	329	MobiDBLite	consensus disorder prediction	205	255	-	-
	Trre15g01109	329	ProSiteProfiles	WRKY domain profile.	142	208	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre15g01109	329	MobiDBLite	consensus disorder prediction	201	273	-	-
	Trre15g01109	329	FunFam	WRKY transcription factor 22	131	201	-	-
	Trre15g01109	329	Pfam	WRKY DNA -binding domain	149	206	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre15g01109	329	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	4	299	IPR044810	GO:0003700
	Trre15g01109	329	Gene3D	WRKY domain	131	201	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre15g01109	329	MobiDBLite	consensus disorder prediction	93	123	-	-
	Trre15g01109	329	SUPERFAMILY	WRKY DNA-binding domain	144	208	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre15g01109	329	MobiDBLite	consensus disorder prediction	17	41	-	-
	Trre15g01109	329	SMART	WRKY_cls	147	207	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre15g01109	329	MobiDBLite	consensus disorder prediction	93	136	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g01109	Trre-Chr15	8587974	8589705	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g01109	1	309	WRKY Transcription Factor Family	AT4G01250	47.134	3.03e-77	237

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Trre15g01109		WRKY	1.2e-25	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre15g01109	15	8587974	8589705	Trre1g05335	1	59206788	59208069	ECH
	Trre15g01109	15	8587974	8589705	Trre15g01109	15	8587974	8589705	ECH
	Trre15g01109	15	8587974	8589705	Trre13g02455	13	22022580	22023836	ECH
	Trre15g00448	15	3218666	3223109	Trre15g01109	15	8587974	8589705	ECH
	Trre13g02455	13	22022580	22023836	Trre15g01109	15	8587974	8589705	PCT