Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01108 ATGGTTATGGAGGAAGATTGGGATCTATTTGCAGTAGTTAGACCCTACACCACCATCACCTCTGGCTCTTCCTCCTCCACCACCACAACAGCCACCTCGTCTACACCTTCTTCATCTGGTTTTGAAACTTCAACATCTTGCAACTTCTTCTCTCTATATCCTACAGAAAATTCAAGTCAAGTTTTGTCACTTTCAAACCCCTTGGAACCAAAAAAACCCATTGAAGAATTGCATGATCTTTGTAAACCTTTCTTCCTTAAACCACAACATCTCTCTTCTAATTCATTCTCTTATTCATCACCATCACCAAAATCACCTCACATACAACCAAAACAACAACAAATTAATAAGAACTCTCACCATGTTGTCTCTGCTACAACCCCAAGATCTAAAAGAAGAAAGATTCAACATAAGAAGGTATGTGAAGTGCAAGCTGAGAATCTCTCATCAGATATATGGGCATGGAGGAAATATGGTCAAAAACCCATCAAAGGGTCACCATATCCAAGAGGATATTATCGATGTAGTAGTTCAAAAGGGTGTTTAGCTAGAAAACAAGTTGAGAGGAACAAATCAGACCCAACAATGTTCATAGTAACGTACACCGGTGAACATAGTCACCCTGCTCCAACGCATAGAAATTCTCTTGCTGGTTCAACAAGGCAGAAGCCATTGTCACCACAAATTGTCACCGCTGATGACTCTTCTCAACCCTTTGCAAAACAAGTTTCTCCATCTACTTCAGGAGCTGAAGAGGAAAATACTACACCCTTAAGTGCAAAATCAGATAGCAAGGATTTGGAAGATTTGATGAATGATGATGATGATGATGTGGAAAATGAATTTGAGTTATCTGATATGGTTGTAACAGATGATTTCTTTGAAGGTTTAGATGAATTGACAGGTTTTGCAGGAAAAACAGTAGCATCTAATGGTGATTGTTTTGGTGATCCATTTGCAGCTAGTATTGCACTGCCTGCTTGTGGTGGCCAATGA 996 0.3956 MVMEEDWDLFAVVRPYTTITSGSSSSTTTTATSSTPSSSGFETSTSCNFFSLYPTENSSQVLSLSNPLEPKKPIEELHDLCKPFFLKPQHLSSNSFSYSSPSPKSPHIQPKQQQINKNSHHVVSATTPRSKRRKIQHKKVCEVQAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKSDPTMFIVTYTGEHSHPAPTHRNSLAGSTRQKPLSPQIVTADDSSQPFAKQVSPSTSGAEEENTTPLSAKSDSKDLEDLMNDDDDDVENEFELSDMVVTDDFFEGLDELTGFAGKTVASNGDCFGDPFAASIALPACGGQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01108 331 Gene3D WRKY domain 133 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g01108 331 MobiDBLite consensus disorder prediction 207 257 - -
Trre15g01108 331 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 301 IPR044810 GO:0003700
Trre15g01108 331 Pfam WRKY DNA -binding domain 151 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g01108 331 MobiDBLite consensus disorder prediction 95 125 - -
Trre15g01108 331 MobiDBLite consensus disorder prediction 203 276 - -
Trre15g01108 331 FunFam WRKY transcription factor 22 133 203 - -
Trre15g01108 331 SMART WRKY_cls 149 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g01108 331 MobiDBLite consensus disorder prediction 21 43 - -
Trre15g01108 331 ProSiteProfiles WRKY domain profile. 144 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g01108 331 SUPERFAMILY WRKY DNA-binding domain 146 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g01108 331 MobiDBLite consensus disorder prediction 95 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01108 Trre-Chr15 8587974 8589711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01108 3 311 WRKY Transcription Factor Family AT4G01250 47.134 2.61e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g01108 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01108 K13425 - gmx:100798084 338.576