Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01099 ATGTCTTCCTCAAACCCTTTCTCTCCATCACCACCACCACCACCACTTCCTTACCTCACCAATCTCGGCTTCGGTTACTCCATAGCCATAGCTCTCGGTTTTCTCTTCCTTCTTTCAACTTTAATCCTCTCTTCTTATCTCTGTTGTCGCACTTTCCGTAACCGTCATAATAACAATAACAACCGTCGCAACAACAACAACCATCAATCTAATGACGACGGCGTTGTTTTACCTCGTGTGATTTTTGTAGCAGAAGAAGATGAAGATCGAGAAGATGTTGTTTTAGGTTTGGATCAGAATGTGATCAATTCGTATCCGAGGTTACAATATGGGAAAGATTTAGGACATGACAGTACTTGTTCGATCTGTTTATGTGAGTATAAGGATTCTGAGATGTTAAGGATGATGCCCGAATGTAGACATTATTTTCATCTTTGTTGTCTTGATTCTTGGTTGAAACTTAACGGTTCTTGTCCCGTTTGTCGAAATTCTCCTATGCCTACTCCGTTATCTACGCCGTTACAAGAAGTTGTTCCTCTTTCTCATTACATTGGTGAAAGAAGGGTAAGAAGGTGA 576 0.408 MSSSNPFSPSPPPPPLPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRTFRNRHNNNNNRRNNNNHQSNDDGVVLPRVIFVAEEDEDREDVVLGLDQNVINSYPRLQYGKDLGHDSTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHYIGERRVRR 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01099 191 PANTHER RING-H2 FINGER PROTEIN ATL67 13 189 IPR044289 GO:0016567|GO:0016740
Trre15g01099 191 Pfam Ring finger domain 119 162 IPR001841 -
Trre15g01099 191 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Trre15g01099 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 167 IPR013083 -
Trre15g01099 191 SMART ring_2 120 161 IPR001841 -
Trre15g01099 191 SUPERFAMILY RING/U-box 105 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01099 Trre-Chr15 8532295 8532870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01099 17 184 C3H Transcription Factor Family AT5G07040 38.372 2.49e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01099 - - vra:106773185 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01099 15 8532295 8532870 Trre15g01099 15 8532295 8532870 ECH
Trre13g02448 13 21952040 21952600 Trre15g01099 15 8532295 8532870 PCT