Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01077 ATGAACAACACACCAGATTGTACAATGATCAAAGACATCACAACTAACTCTCATAATGTTAGTTGTCATGTCCGAGTTGTGAGAAAGTGGTTAGCTGTTAACCCAAAAGACCACCAAACGGTCTTCTCAATGGAATGTGTTCTCCTCGATTCTCAGGGTCACAAAATCCAATCAACTATGCGGCATCAGTTGATCTACCTCTTCAAGGATCAACTTCAAGAGGGAAAGGTTTATGATTTGATTGGTCTGGGTGTCATTCCAAATAACAAGGGTGAGTATCGTGCAACTAGACACCCATGCAAGTTAGTTTGGGAAAAGAACACAAAGGTTGAAAACAAATCTGATTCGTCAGTACCACCTGACGTTCTAACGTTCACAGACCCTAGAGACGTGTTTGATGATACCTATGATATCAATTATTTGTGTCATCTTACGGGGATTCTTTGTACTATTGGTGTGGAGCGTTCATTCGGACAGGGTAAAAACAAGGGCAAACTTAATTATGTCGAACTTGATAACAATGGCTACCGTTTCAAAATTACATTGTTTGGGTCTGAAGTTGATGAACTTAACTCATTCATTACCTCTGGGAATGCTACAAATGCCGTTGTTGTCGTTCTTTTCGCCAAAGTCAGAATTTGGAATGGGTCAAGGAATTTGAACACCAGTTTAGGTTCTTCACAGGTCATATTTAACCCGGATATCCCCGAAGTTGCAGCACTAAAATTGATCACTTCTGAAAACAATGATTCTCATAAACAATTGTTGAGTCCAGTTAGTTCATCTCCAATTATTTCCATTGAAGATGACCTACTAAAAGTCACACCTAGGGGCAATATTCAGACACTTCTAGAATGTCAACAAGAATCAGTGTTTATAATCTTGGCTGAAATCAAATCTATTGATGATCGTGTTTGGTGGTATCAGTCGTGTAAAACACATAACATAAAGGTATCACCCGACGCAGACGAGTACTACTGTAATAAATGTAAAATGCATGTATCAGATGTAGTTCCACGGTATTACCTTAAGCTTCATGTGGAGGATGAGACAAGATCAGCCACTTTTGTGATGTTTGACAAAGATGCTTATATTTTGCTTAATAAAACTTGTGCAGAGTTGGTTAATTCTGTTAAAAAGAGCCCTAATCCACAAGTACTTCCTAAAGAGCTAACAAATCTCACAAGTAGAACCTATCTTTTCAAGATTGCTTGTGACCTTGCAATTGGAACAAAGTTTGAACCTTCTTATAAGGTGAAAACTGTTACTGACGATCATAATTTGATTGAACAGTGGAAAGAACTTGGAAAATCTAAGATTATATCACCTAGCGGGTCGGAAGTCGCAGTTACTTGTGTTGATGTCAAGTCACAGATCACTTCAGATATAACTGGGCAGGATCTTATGACAAAATTTGATGAAACTGAAGCTGCAGTGGAGAAGGTCAACGTTAGCGCTCCTATAGAGGTCATAGACTTATGCTCACATAAAACTGATGGTGTAGCAGTTAAGAGACCTTGCCCTGATGGAGTTGATTTACCAACAACCAAATATATCAAGACCAATATTAAAATTGAGAAAGAATAG 1587 0.3837 MNNTPDCTMIKDITTNSHNVSCHVRVVRKWLAVNPKDHQTVFSMECVLLDSQGHKIQSTMRHQLIYLFKDQLQEGKVYDLIGLGVIPNNKGEYRATRHPCKLVWEKNTKVENKSDSSVPPDVLTFTDPRDVFDDTYDINYLCHLTGILCTIGVERSFGQGKNKGKLNYVELDNNGYRFKITLFGSEVDELNSFITSGNATNAVVVVLFAKVRIWNGSRNLNTSLGSSQVIFNPDIPEVAALKLITSENNDSHKQLLSPVSSSPIISIEDDLLKVTPRGNIQTLLECQQESVFIILAEIKSIDDRVWWYQSCKTHNIKVSPDADEYYCNKCKMHVSDVVPRYYLKLHVEDETRSATFVMFDKDAYILLNKTCAELVNSVKKSPNPQVLPKELTNLTSRTYLFKIACDLAIGTKFEPSYKVKTVTDDHNLIEQWKELGKSKIISPSGSEVAVTCVDVKSQITSDITGQDLMTKFDETEAAVEKVNVSAPIEVIDLCSHKTDGVAVKRPCPDGVDLPTTKYIKTNIKIEKE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01077 528 CDD RPA1_DBD_A_like 24 110 - -
Trre15g01077 528 Pfam Domain of unknown function DUF223 45 141 IPR003871 -
Trre15g01077 528 Pfam Replication factor-A C terminal domain 292 405 IPR013955 -
Trre15g01077 528 SUPERFAMILY Nucleic acid-binding proteins 286 424 IPR012340 -
Trre15g01077 528 SUPERFAMILY Nucleic acid-binding proteins 135 242 IPR012340 -
Trre15g01077 528 CDD RPA1_DBD_B_like 146 244 - -
Trre15g01077 528 CDD RPA1_DBD_C 280 425 IPR047192 -
Trre15g01077 528 Gene3D - 6 115 IPR012340 -
Trre15g01077 528 SUPERFAMILY Nucleic acid-binding proteins 6 115 IPR012340 -
Trre15g01077 528 PANTHER OS03G0429900 PROTEIN 8 405 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre15g01077 528 Gene3D - 117 255 IPR012340 -
Trre15g01077 528 Gene3D - 272 433 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01077 Trre-Chr15 8352559 8355176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01077 34 404 Core DNA Replication Machinery Family AT5G08020 21.891 7.09e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01077 - - tpra:123887545 300.056