Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01076 ATGCCGAAGAACAAAGGAAAAGGAGGAAAGAATCGCAAGAGAGGAAAGAACGAAGCAGACGACGATAAACGAGAACTCGTTTTCAAAGAAGATGGTCAAGAATACGCTCAGGTTCTCCGAATGCTCGGTAATGGTCGTTGCGAAGCACATTGCTTCGACGAAGATGGTGGAAAAAAACGTCTCTGTCATATTCGTGGTAAGATGCATAAGAAAGTTTGGATCGCCGCCGGCGATATTATTCTCCTCGGTCTTCGTGATTATCAGGATGATAAATCTGATGTTATTCTGAAATATATGCCTGATGAAGCTAGGCTTCTTAAAGCTTATGGTGAACTTCCTGAACATATTAGATTTAATGAAGGTGTTGTTCTTGATGAAGACGATGATGATACTAATAATTACATTGAGTTTGAGGATGAAGATATTGATAAGATTTAA 438 0.3927 MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAHCFDEDGGKKRLCHIRGKMHKKVWIAAGDIILLGLRDYQDDKSDVILKYMPDEARLLKAYGELPEHIRFNEGVVLDEDDDDTNNYIEFEDEDIDKI 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01076 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Trre15g01076 145 SUPERFAMILY Nucleic acid-binding proteins 2 141 IPR012340 -
Trre15g01076 145 CDD S1_IF1A 33 112 IPR001253 GO:0003743|GO:0006413
Trre15g01076 145 Hamap Translation initiation factor 1A [eif1a]. 16 113 IPR001253 GO:0003743|GO:0006413
Trre15g01076 145 NCBIfam translation initiation factor eIF-1A 14 113 IPR001253 GO:0003743|GO:0006413
Trre15g01076 145 ProSiteProfiles S1 domain IF1 type profile. 22 99 IPR006196 GO:0003723|GO:0003743|GO:0006413
Trre15g01076 145 MobiDBLite consensus disorder prediction 1 25 - -
Trre15g01076 145 Gene3D - 2 145 IPR012340 -
Trre15g01076 145 SMART eIF1neu4 28 113 IPR001253 GO:0003743|GO:0006413
Trre15g01076 145 Pfam Translation initiation factor 1A / IF-1 32 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01076 Trre-Chr15 8340610 8341047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01076 1 145 Eukaryotic Initiation Factors Gene Family AT2G04520 81.081 1.45e-80 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01076 K03236 - jre:109019055 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01076 15 8340610 8341047 Trre15g01076 15 8340610 8341047 ECH