Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01069 ATGGGACACAGTGAAGATGGGAAATCAATTAAGATTGAAAAGCCTTCTTCACCTGTAACAACTGACCAGATCAATCAAACCAACCAACCTAATAACATTCATGTCTATCCTGATTGGGCTGCCATGCAGGCATATTATGGGCAAAGAGTCAACATTCCACCATACTTCAACTCAACTGTTGCTTCTGGTCATGCTCCTCACCCATACATGTGGGGACCGCCACAGCCTATGGTTCATCCATATGGGCCACCTTATGCATCATTTTATCCACATGGAGGGGTTTATACTCACCCTGCGGTTGCCGTTGGGCCAAATTCACATGGTCAAGGAATACCATCTTCACCTGCTGCTGGGACTCCTTCAAGCATAGAGACACCAACCAAATCATCTGGAAACACTGATCAGGGTTTAATAAAAAAAATGAAAGGATTTGATGGACTTGTAATGTCAATAGGCAACGGCAATGCTGAGAGTGCTGAGCGTGGAGCGGAAAACAGGCTATCACGGAGTGTGGATACTGAGGGTTCCAGCGATGGAAGTGATGGCAACACTACTGGGACCAATGGGACGAGGAAAAGGAGCCGGGATGGAACACCAACTACCACTGATGGAGAAGGGAAAACTGAGATTCAAGATACTCCAGTTTCCAAAGACACCACAGCTTCCAAAAAGGCGGTGATAGTTACTCCAACAAGTGTTGCAGAAAAATTTGTTGGGCCTGTACCTTCTTCAGGTATGACTACAGCACCGGAGCTGAGGAACCCTTTGACTGTTTCCACTGGTGCTGCACAACCTTTTGGAGTTTTGCCTCCTGAAGCTTGGATGCAGAATGAGCGTGAGCTGAAACGTGAGAGGAGGAAACAATCAAACCGTGAATCTGCTAGAAGGTCCAGGCTGAGGAAGCAGGCCGAAGCTGAAGAACTGGCACGAAGAGTTGATGCATTGACTTCTGAGAATTTGTTGCTGAAATCGGAAATGAATGAATTGGCTCAAAATTCCGAGAAACTGAAGATGGAAAATGCTGCATTAAAGGAAAAGCTGAAAAACACTCAACTGGGACAAACAGAAGAGATAATTTTGAACAACATTGACAAGAGGGTTACACCTGTAAGTACAGAAAACTTACTATCAAGGGTTAATAATTCGAATTCTGATGATAGAACTGCAGAAGAAGAGAATGGTTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTACTTGATACAAATCCTAGAGCTAATGCTGTTGCAGCTAGTTGA 1269 0.4452 MGHSEDGKSIKIEKPSSPVTTDQINQTNQPNNIHVYPDWAAMQAYYGQRVNIPPYFNSTVASGHAPHPYMWGPPQPMVHPYGPPYASFYPHGGVYTHPAVAVGPNSHGQGIPSSPAAGTPSSIETPTKSSGNTDQGLIKKMKGFDGLVMSIGNGNAESAERGAENRLSRSVDTEGSSDGSDGNTTGTNGTRKRSRDGTPTTTDGEGKTEIQDTPVSKDTTASKKAVIVTPTSVAEKFVGPVPSSGMTTAPELRNPLTVSTGAAQPFGVLPPEAWMQNERELKRERRKQSNRESARRSRLRKQAEAEELARRVDALTSENLLLKSEMNELAQNSEKLKMENAALKEKLKNTQLGQTEEIILNNIDKRVTPVSTENLLSRVNNSNSDDRTAEEENGFCENKPNSGAKLHQLLDTNPRANAVAAS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01069 422 Pfam G-box binding protein MFMR 1 100 IPR012900 -
Trre15g01069 422 SUPERFAMILY Leucine zipper domain 281 337 IPR046347 GO:0003700|GO:0006355
Trre15g01069 422 SMART brlzneu 278 342 IPR004827 GO:0003700|GO:0006355
Trre15g01069 422 MobiDBLite consensus disorder prediction 107 136 - -
Trre15g01069 422 MobiDBLite consensus disorder prediction 14 30 - -
Trre15g01069 422 Gene3D - 281 354 - -
Trre15g01069 422 Coils Coil 291 353 - -
Trre15g01069 422 MobiDBLite consensus disorder prediction 169 195 - -
Trre15g01069 422 SUPERFAMILY BLRF2-like 325 391 - -
Trre15g01069 422 MobiDBLite consensus disorder prediction 105 137 - -
Trre15g01069 422 Pfam Disordered region downstream of MFMR 134 259 - -
Trre15g01069 422 Pfam bZIP transcription factor 278 340 IPR004827 GO:0003700|GO:0006355
Trre15g01069 422 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 280 343 IPR004827 GO:0003700|GO:0006355
Trre15g01069 422 CDD bZIP_plant_GBF1 283 331 IPR045314 GO:0003700|GO:0006355
Trre15g01069 422 MobiDBLite consensus disorder prediction 203 222 - -
Trre15g01069 422 MobiDBLite consensus disorder prediction 282 305 - -
Trre15g01069 422 MobiDBLite consensus disorder prediction 156 222 - -
Trre15g01069 422 MobiDBLite consensus disorder prediction 377 422 - -
Trre15g01069 422 MobiDBLite consensus disorder prediction 1 30 - -
Trre15g01069 422 PANTHER G-BOX-BINDING FACTOR 3-RELATED 15 385 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trre15g01069 422 Coils Coil 418 422 - -
Trre15g01069 422 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 285 300 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01069 Trre-Chr15 8309837 8313869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01069 11 421 bZIP Transcription Factor Family AT2G46270 49.157 1.08e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre15g01069 MFMR_assoc 9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01069 K09060 - gmx:778133 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01069 15 8309837 8313869 Trre15g01069 15 8309837 8313869 ECH