Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01046 ATGTGCAGTTTCTATTTCATCTTCATCTTCTCCATCATCTTCTTCTTCTTTTCACCATTAACATTATCTTTGGAATCAAGAAGAATCCTTCATCAACCTTTTGAATCTCCAAACTCACTCTCACCTTCTCAATCTCCAAACCCATCTCCATCCCCACCACCATCACCAAATCCAAAACTACCATTTTCCACAACTACCCCTAACACTTCTTCATCATCAATATCATCATCAAATACACCCCCTTTTTTCCCAACATACCCTTCACCTCCACCACCACCACCTTCACCTTCTTCTTTCGCTTCATTCCCTGCTAACATCTCTTCTCTTATTCTTCCTCAATCCTCTAAACCCAAATCTTCTTCTTCCAAACTCCTCGCCGTCGCCATTACCGCCGTCATCGCCGCCGTAGTTGTTGCTTCCATTTCAGCTTTCATTTACTGTCGCAGAAAAAGAAAAAGCTTCTCTAATGATGATAAAACACTCAGATCCGATAGTAGTATTCGTCTTTTTCCTCGGGAAGGTGGTGGTGGTGGCGCCACCGTTGGCGCCGCCACCGTGAAGTCGAGGAATGTTTCTTCTACTAGCTCAGAGTTTCTTTATCTTGGTACCATTGCTAACTCTCGTGGTGATGATCTACCTAATGCTGGCGGTGGTGGTGTTGGTGCTCGGAATCCTAGAAAAATGGACTCGCCGGAGCTTCAGCCATTACCGCCACTTGCGCGACAAGGTTCGTTATCGCGCTTTTACGATGCAGGTGTGAATGTTGGTGAAGATGAAGAAGAAGAGTTTTATTCACCAAGAGGTTCTTTGAACGGAATTGGATCGGGTTCTCGGAGAGTTTTCGCCGGAATTTCAGCTGAAAATTTGGTGGGTCGAAGTAGTAGTGAATCAACTTCATCTTCTTCTTATTCATCTTCTTCTGCTTCACCGGATCGTTCTCATTCGATTAGTCTTTCGCCGCCGGTAAGTTTAAGTCCAAGAAGATCACAGTCAAAGTCGCCGGAAAATGTACAAACACCGCCACCGACACAGCCATTACTTGGCACCGACGGTGGAAGAACCTCGTTTTCTTCATCAACAGTTTCTTCTCCACGAGCGTCTTCAAACTTGAACGTGAAGTCTTCTTGTTCAATGTCTTCTACGCCGGAGAAAATCTTCGCCGGAGAATGTCAATCACCGTCTTTATCACCTTTGAATCTTTCACCGACGAAAAACTTAGATGGGTCTTTTGTTAAAGTTGAAAAGACTCAATCTTGTAATGAAGATGGTTCTTCTCCTAGATTATCTAATGCTTCTAGTGGTAAATCTTCTTCGGCGTTTACTTTACCGTCGCCGGAGAAAATGACAATGATGCAAGATCATAATAATCATGGTTTGGATCAATCTCCAACTATTTCAGATGTTTCAGATCGGTTTAGACATTCTCCTTTGTCTTCATTACCTCTTTCACCGACGCTTTTATCATCGCCGGAGAGAGAGATGAACACGATGAATATGATGAACATGATGAACACGATGAATATGATGAACACTCAACCACCACCACCGCCGCCACCACCACCTACTAGGAAGCATTGGGAGATTCCTGACCTTTTAACACCAATTGTTGAATCACCAACTGTTTTGATTCAACAAGGTGTTGTTTCTCAAAGAAAACAATGGGAAATTCCGGTTCTTACAACACCAATTGCATCTTCTAGTAGTGTTTCAGCAGCTCCTCCACCACCGCCACCCCCACCACCGGCAATGCCGATGCGGCAAAGGAAGCAATGGGAAGTACCTTCTCCAACAACTCCTGTCGGTCAACCGGTTGTTTCTAGGCCACCGGAATTGAAACCTCCTTCAAGGCCTTTTGTGTTGCAAACCCCTCCAAATACATTGGTTTCTCCTGTTGAATTGCCACCTAGTTTTGAGGAGAATGCTGAAGAGGTTTCTAAACCAAAGTTGAAACCTTTGCATTGGGATAAAGTGAGAGCTAGTTCCGATCGTGAAATGGTTTGGGATCATTTGAGATCCAGCTCATTTAAGTTGAATGAGGAAATGATAGAAACTTTGTTTGTGGTGAACACACCGAATTCAAAACCAAAAGATGCTACGCCACGTTCCGTTCTTACACCTCAACATCATGAGGATAGGGTATTGGATCCTAAAAAGTCACAAAATATAGCTATCTTGCTTCGAGCGGTTAACGTTACAGTAGAGGAAGTGTGTGAAGCACTGTTAGAAGGTGTTACGGATACACTTGGAACCGAACTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAGCGTAAATTGAAGGAACATAAAGACGACTCTCCAAACAAACTCGGTCATGCTGAGAAGTTTTTGAAGGCAGTTCTCGATGTACCTTTCGCATTTAAAAGGGTGGAAGCTATGCTTTACATAGCCAATTTTGAGTCTGAAGTGGAGTATCTTCGTAAATCATTTCAAACTCTAGAGGTTGCATGTGAAGAGCTACGAAACAGTAGAATGTTCTTGAAGCTTCTAGAAGCTGTGCTAAAAACTGGAAATCGCATGAATGTTGGAACAAACCGAGGTGATGCACATGCATTCAAGCTCGATACACTTCTAAAGCTAGTTGATGTCAAAGGTGCAGACGGAAAAACAACTCTTCTACATTTTGTTGTACAAGAAATCATTAGAACCGAAGGAGCTCGTCATTCAGATACTACTACTAATCAAACACCGGCAACAATATTGAGCGACGACGCCAAGTGTAGAAGACTCGGCCTTCAAGTAGTATCTAGTCTAAGTTCCGATCTAGCCAATGTGAAGAAAGCCGCAGCGATGGACTCCGAAGTTCTCACAAGCGAAGTCTCTAAACTTTCAAAAGGAATCACACACATTGCCGAGATTGTGAAATTAAATCAAACAGCAGGATCAGACGAAACGGTTAAAAAATTCACAGAATCAATGAACAAGTTCATGAGAATGGCTGAGGAGGAGATTGTTAGAATTCAAGCACAAGAAAGTGTTGCTTTATCACTAGTGAAAGAGATCACAGAGTATTTTCATGGAAACTTGTCTAAGGAAGAAGCTCATCCATTTAGAATCTTCATGGTAGTAAGAGACTTTTTAACAGTTCTTGATAGAGTATGCAGAGAAGTTGGTAATATAAATGAAAAGACCATGATTAGTTCAGCTCATAGATTTCCGGTTCCGGTGAACCCTATGCTTCCACAACCACTTCCCGGATTACATGGACGGAGAAATTACAGCTCCTCAGACGATGATAGTCCATCTCCTTAG 3282 0.4269 MCSFYFIFIFSIIFFFFSPLTLSLESRRILHQPFESPNSLSPSQSPNPSPSPPPSPNPKLPFSTTTPNTSSSSISSSNTPPFFPTYPSPPPPPPSPSSFASFPANISSLILPQSSKPKSSSSKLLAVAITAVIAAVVVASISAFIYCRRKRKSFSNDDKTLRSDSSIRLFPREGGGGGATVGAATVKSRNVSSTSSEFLYLGTIANSRGDDLPNAGGGGVGARNPRKMDSPELQPLPPLARQGSLSRFYDAGVNVGEDEEEEFYSPRGSLNGIGSGSRRVFAGISAENLVGRSSSESTSSSSYSSSSASPDRSHSISLSPPVSLSPRRSQSKSPENVQTPPPTQPLLGTDGGRTSFSSSTVSSPRASSNLNVKSSCSMSSTPEKIFAGECQSPSLSPLNLSPTKNLDGSFVKVEKTQSCNEDGSSPRLSNASSGKSSSAFTLPSPEKMTMMQDHNNHGLDQSPTISDVSDRFRHSPLSSLPLSPTLLSSPEREMNTMNMMNMMNTMNMMNTQPPPPPPPPPTRKHWEIPDLLTPIVESPTVLIQQGVVSQRKQWEIPVLTTPIASSSSVSAAPPPPPPPPPAMPMRQRKQWEVPSPTTPVGQPVVSRPPELKPPSRPFVLQTPPNTLVSPVELPPSFEENAEEVSKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFVVNTPNSKPKDATPRSVLTPQHHEDRVLDPKKSQNIAILLRAVNVTVEEVCEALLEGVTDTLGTELLESLLKMAPSKEEERKLKEHKDDSPNKLGHAEKFLKAVLDVPFAFKRVEAMLYIANFESEVEYLRKSFQTLEVACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARHSDTTTNQTPATILSDDAKCRRLGLQVVSSLSSDLANVKKAAAMDSEVLTSEVSKLSKGITHIAEIVKLNQTAGSDETVKKFTESMNKFMRMAEEEIVRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCREVGNINEKTMISSAHRFPVPVNPMLPQPLPGLHGRRNYSSSDDDSPSP 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01046 1093 Gene3D Formin, FH2 domain 636 1050 IPR042201 -
Trre15g01046 1093 MobiDBLite consensus disorder prediction 211 240 - -
Trre15g01046 1093 PANTHER FORMIN-RELATED 392 1087 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre15g01046 1093 MobiDBLite consensus disorder prediction 414 491 - -
Trre15g01046 1093 MobiDBLite consensus disorder prediction 1070 1093 - -
Trre15g01046 1093 MobiDBLite consensus disorder prediction 35 97 - -
Trre15g01046 1093 Pfam Formin Homology 2 Domain 644 1040 IPR015425 -
Trre15g01046 1093 MobiDBLite consensus disorder prediction 691 713 - -
Trre15g01046 1093 SMART it6_source 639 1055 IPR015425 -
Trre15g01046 1093 MobiDBLite consensus disorder prediction 62 81 - -
Trre15g01046 1093 ProSiteProfiles Formin homology-2 (FH2) domain profile. 639 1066 IPR015425 -
Trre15g01046 1093 MobiDBLite consensus disorder prediction 291 378 - -
Trre15g01046 1093 MobiDBLite consensus disorder prediction 43 61 - -
Trre15g01046 1093 MobiDBLite consensus disorder prediction 82 97 - -
Trre15g01046 1093 MobiDBLite consensus disorder prediction 563 625 - -
Trre15g01046 1093 MobiDBLite consensus disorder prediction 569 585 - -
Trre15g01046 1093 MobiDBLite consensus disorder prediction 601 620 - -
Trre15g01046 1093 SUPERFAMILY Formin homology 2 domain (FH2 domain) 573 1053 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01046 Trre-Chr15 8120367 8124640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01046 78 344 FH2 protein (formin) Gene Family AT3G25500 44.043 2.76e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01046 - - gmx:100802678 1216.83