Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01041 ATGACTGCAAATAATGGAAGAGGAAGTAATCAAGAACATAAGAGAAAAATCAATGACCCTTTACCAAGGTCATGCACCCCTAGAAATGTTACTTCTTTAGCTGGATCTGGTCCTACTAGTACTAGTTTTTGTTCCACTACAGATCCTAAACACATTGTTGAAAAGTTGCATGTTAGGAATTATAAAAACTTGAATCATCAATTAGCTTTTGAGTCTAAGTATAGTAATAGTTTGAGTAGAGATATTCCTTTAAAAGTTAAAGGAGGATTAAAGGGAAAGGGAATTGATTCTAGAAAGAATTTGAATTTGAAGTTGAATTTGAATCATCATCAACCAGATAAAGGTTTTGTTAATATGAGCAATATAGAGAATACATTGAAGGGAAAGGAAGTTATTTATAAAGATTTAGGCAATGTTGTGTCGGGGGCGGAATGTTTTAATGATGAACTAAACTTAAGAGTGTGGATGAAGTCCGAAAGTCGAAAAATGAAGAAATCGGAGAGGTTGTATTTATTTAAACAGATTTTGGAATTGGTTGATTTTGCACACTCACAAGGATTTGTCTTACAAGACTTAAAACCGTCTTGTTTCGCTTTGTTGCCTTCGAATAAAATTAAATATGTAGGTTCGTATGGTCAACAAGTGTTTGATGACGAAAAATCGTGTTTCACGTTATTTAAGTCATGTCTTAAGGCCATCATGACTTGCAATGTGACAAAGAAAATGCCTTGGGAAGAGGATACATGTGGTTGTCAAAATTTGAATGGTACAAAGAAACAAAAGCTATGTGAAGAGACAACATCTCTCAAGCAGCAGCAGCATCACTTCAACTGTAATCATGGATGTGACACAAATATGTTCATGGAATCAAATTTGTGCCTAGATGGTTCGAGTTATCAACATGCTTTTGCAGAAGAAAAACAGTTTATTTCTGAAACCATTCAGTTAGAAGAGAAGTGGTATTCTTGTCCAGAAGTGCTTAATGATGGAACTAATACATTTTCATCAAATGTTTATAGTCTCGGAGTTCTTGTTTTCGAGTTACTGTGCAATATTGAGTCATTGGAAGCACATTCATCTGTGATGTTCGATATGCGTCATAGAATCTTACCTCCAAAATTTCTATCACAAAATGCAAAGGAAGCTGGATTTTGTCTTTGGCTACTTCATCCGGAACCTTCTTCTCGTCCAAATACCAAGATGATTTTAGAATCTGAATTTATACGCGAGTTAGCGGAATTAAATTCTGGTAATACTAATGTCATAGTATCTGAAGATGATGTAACTGACACCGAGGAATTACTGCATTTTCTAAATTCAGTTGGAGAAGGAAAGAAAAAACAAGAAGCCAAATTGGCGGAAGAGTTAAATTGTTTGAATGAAGATATTAAGGAGGTAGAAAGAAACCATTCGTATGGGACTGATTCAGCATTTCATTTGGCACAATTGAACTATCTACATTATCAAGATTCATCAAGTAAAGATACTAGTAGATATTTTCCAAGTTCATTTGTCGATGAAGCAAGATTTATGAGTAATATAAATCAGCTAGAGAATAGTTACTTCTCGATGAGATTCCAAAGCAGTGATAAAAGTGTGATGGAAAATCGATTGAGATTGCCTCATTTAGAGAATGTTAGTAATGGTGGTTTAGGACCCTTCTTTGATGGTATATGCAAATTCGCTCGTTACAGCAAGTTTGAAGAGCGCGGAACGTTGAGAAATAGTGATCTGCTGAGTTCTGCCAATGTGATATGTGCCTTAAGTTTTGATCGCGATGAGGATTACATTGCAGCAGGTGGAATTTCAAAGAAAATAAAGATATTTGACCTCAATGCTGCTTCAAGTGATTCTGTAGACATTCAGTATCCTGTTGTTGAGATGTCGAACAAATCAAAGCTTAGTTGTGTGTGCTGGAATAGTTATATAAAAAACCATCTCGCGTCTACTGATTATGATGGTGTGGTTCAGATGTGGGATGCAGGCACCGGTCAGCCGCTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCGGTATCTGACCCGAAAATGTTTGCCAGTGGAAGCGATGATTGCTCTATCAAACTGTGGAATATCAGCGAGAGAAATTCGATCGGAACCATATTGAGCCCTGCAAATGTATGTTGTGTTCAATTCTCTGAATACTCCACAAATCTTTTATTTTTCGGATCGGCTGATTACAAGGTATACGGTTATGATCTTCGTAACACTAAAATCCCTTGGTGTACATTAGCCGGTCATGGAAAAGCTGTTAGCTATATAAAATTTATAGATGCACAAACAGTTGTATCTGCTTCCACTGATAACTCCTTGAAGCTATGGAACCTGAAGAAAACTAGCTCAGCCGAGTTGTCATCTGATGCTTGTGACTTAACCTTTAGAGGTCATAGTAATGAAAAGAATTTTGTTGGTTTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATCTCTGCCGGTGCCAATCGCTTCTCACAGATTCGAGTCAAACAATCCCATTTCTGGTCATTCAAATAGTTTTGACAACAATGGACAGTTTGTTTCTAGTGTCTGTTGGAGAAAGAAGTCTAACATGCTTGTTGCAGCCAACTCAGTTGGAATTATAAAACTACTGAAGATGGCGTGA 2691 0.3664 MTANNGRGSNQEHKRKINDPLPRSCTPRNVTSLAGSGPTSTSFCSTTDPKHIVEKLHVRNYKNLNHQLAFESKYSNSLSRDIPLKVKGGLKGKGIDSRKNLNLKLNLNHHQPDKGFVNMSNIENTLKGKEVIYKDLGNVVSGAECFNDELNLRVWMKSESRKMKKSERLYLFKQILELVDFAHSQGFVLQDLKPSCFALLPSNKIKYVGSYGQQVFDDEKSCFTLFKSCLKAIMTCNVTKKMPWEEDTCGCQNLNGTKKQKLCEETTSLKQQQHHFNCNHGCDTNMFMESNLCLDGSSYQHAFAEEKQFISETIQLEEKWYSCPEVLNDGTNTFSSNVYSLGVLVFELLCNIESLEAHSSVMFDMRHRILPPKFLSQNAKEAGFCLWLLHPEPSSRPNTKMILESEFIRELAELNSGNTNVIVSEDDVTDTEELLHFLNSVGEGKKKQEAKLAEELNCLNEDIKEVERNHSYGTDSAFHLAQLNYLHYQDSSSKDTSRYFPSSFVDEARFMSNINQLENSYFSMRFQSSDKSVMENRLRLPHLENVSNGGLGPFFDGICKFARYSKFEERGTLRNSDLLSSANVICALSFDRDEDYIAAGGISKKIKIFDLNAASSDSVDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQPLSQYMEHQKRAWSVHFSVSDPKMFASGSDDCSIKLWNISERNSIGTILSPANVCCVQFSEYSTNLLFFGSADYKVYGYDLRNTKIPWCTLAGHGKAVSYIKFIDAQTVVSASTDNSLKLWNLKKTSSAELSSDACDLTFRGHSNEKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPIASHRFESNNPISGHSNSFDNNGQFVSSVCWRKKSNMLVAANSVGIIKLLKMA 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01041 896 PANTHER PROTEIN SPA1-RELATED 2 93 895 IPR044630 GO:0009640
Trre15g01041 896 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 756 789 - -
Trre15g01041 896 Pfam WD domain, G-beta repeat 665 703 IPR001680 GO:0005515
Trre15g01041 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 712 IPR001680 GO:0005515
Trre15g01041 896 SUPERFAMILY Protein kinase-like (PK-like) 150 413 IPR011009 -
Trre15g01041 896 Coils Coil 449 469 - -
Trre15g01041 896 Gene3D - 555 896 IPR015943 GO:0005515
Trre15g01041 896 ProSiteProfiles Protein kinase domain profile. 28 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01041 896 SMART WD40_4 848 894 IPR001680 GO:0005515
Trre15g01041 896 SMART WD40_4 663 703 IPR001680 GO:0005515
Trre15g01041 896 SMART WD40_4 706 745 IPR001680 GO:0005515
Trre15g01041 896 SMART WD40_4 749 787 IPR001680 GO:0005515
Trre15g01041 896 SMART WD40_4 798 837 IPR001680 GO:0005515
Trre15g01041 896 SMART WD40_4 575 610 IPR001680 GO:0005515
Trre15g01041 896 SMART WD40_4 621 660 IPR001680 GO:0005515
Trre15g01041 896 MobiDBLite consensus disorder prediction 1 43 - -
Trre15g01041 896 SUPERFAMILY WD40 repeat-like 583 893 IPR036322 GO:0005515
Trre15g01041 896 SMART serkin_6 28 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01041 896 MobiDBLite consensus disorder prediction 24 43 - -
Trre15g01041 896 ProSitePatterns Trp-Asp (WD) repeats signature. 774 788 IPR019775 -
Trre15g01041 896 PRINTS G protein beta WD-40 repeat signature 774 788 IPR020472 -
Trre15g01041 896 PRINTS G protein beta WD-40 repeat signature 647 661 IPR020472 -
Trre15g01041 896 PRINTS G protein beta WD-40 repeat signature 690 704 IPR020472 -
Trre15g01041 896 ProSiteProfiles Trp-Asp (WD) repeats profile. 756 796 IPR001680 GO:0005515
Trre15g01041 896 Gene3D Transferase(Phosphotransferase) domain 1 148 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01041 Trre-Chr15 8096759 8100111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01041 667 836 Miscellaneous Gene Families AT5G08390 23.256 4.37e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Trre15g01041 WD40 0.0071 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01041 K16240 - gmx:100802144 1106.66