Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01026 ATGGCTTCTACTTCAAGGAGATTACCAACACCTCAAGAAAGAGAAAAATGGAAACACATTTTTGACACTATCATAGATCCAAATCTGGCACCAATTGAAATCCCTCAACCTTTTTTCCACAAAATGAAAGGTGAGTTTATAAAACACACATTTGGTTGGATCAGGGGTCCAAAAAAAATGAAAATCATGGTTAGATATCTCCAATCCAATAGTGGTATCAAGCTCTCCTCTGGAGTGTGTGTTTCTCGATATTTTGGATTTGTTATACCAACAAGGGTGACACTTAGCTATGTGATTGAAGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCTCAGGCAACTTTGAAAAGGAAACATCAAAAGGAGATATTAGGCAATAATGATGATCAAGATGAGTCAAATTCCAATAGGTGCAAGAGACCTAAAGGCAACAAACAAGCTGTGTATTTGAAGTCCCCCCCTCCATGTCAAAAACAGAAAATTTTGAAGTCTACCCCAAAGGAATTAAGCAAACAACGACACATTCGTGCATCTCAGAAAAAAAAAGATTTGAAATCCACACCAAAGAAATCAAACAAACAACATCAGTATAAGCATTCAAGGAGACCAGCCATTGTAAAGCTGAATCCTGATGGAAGCTATGGTTGGGAGAAGATTGTAACTAGAGCTGGTGCAGCCGATGCAAGACCTCAAGTCATGCATTTTCCTAAGCAATTTTCTAGATTGTTTTTGGGAAAAAAACAAAACAAAGTGTTGGTCCAAGCTGAAGCAGGAGATACATTCTCTTGCAAGATTATGACAGCGACAAGGAATAGAGATGAAAAATACATATCAAAAGAGTGGACCAAATTTGTGAGAAGAAACAACCTTCAAGTTGGAGACAAGCTCATTTTCACTCTTCAAAACCAACCAACAAAACTCCTGATTCAGATCATCCATTGTAGTGTGCACGATTGA 987 0.3779 MASTSRRLPTPQEREKWKHIFDTIIDPNLAPIEIPQPFFHKMKGEFIKHTFGWIRGPKKMKIMVRYLQSNSGIKLSSGVCVSRYFGFVIPTRVTLSYVIEENTFWMRIYPPLQPVKTEFPPQATLKRKHQKEILGNNDDQDESNSNRCKRPKGNKQAVYLKSPPPCQKQKILKSTPKELSKQRHIRASQKKKDLKSTPKKSNKQHQYKHSRRPAIVKLNPDGSYGWEKIVTRAGAADARPQVMHFPKQFSRLFLGKKQNKVLVQAEAGDTFSCKIMTATRNRDEKYISKEWTKFVRRNNLQVGDKLIFTLQNQPTKLLIQIIHCSVHD 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01026 328 Gene3D - 174 326 IPR015300 -
Trre15g01026 328 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 131 323 IPR044837 -
Trre15g01026 328 SMART B3_2 227 325 IPR003340 GO:0003677
Trre15g01026 328 MobiDBLite consensus disorder prediction 196 212 - -
Trre15g01026 328 Pfam B3 DNA binding domain 243 322 IPR003340 GO:0003677
Trre15g01026 328 CDD B3_DNA 243 322 IPR003340 GO:0003677
Trre15g01026 328 MobiDBLite consensus disorder prediction 125 218 - -
Trre15g01026 328 MobiDBLite consensus disorder prediction 125 149 - -
Trre15g01026 328 ProSiteProfiles B3 DNA-binding domain profile. 228 325 IPR003340 GO:0003677
Trre15g01026 328 SUPERFAMILY DNA-binding pseudobarrel domain 241 319 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01026 Trre-Chr15 8010835 8012596 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g01026 B3 6.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01026 - K03944 tpra:123904760 192.586