Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01025 ATGGCTTCTACTTCAAGGAGATTACCAACACCTCAAGAAAGAGAAAAATGGAAACACATTTTTGACACTATCATAGATCCAAATCTGGCACCAATTGAAATCCCTCAACCTTTTTTCCACAAAATGAAAGGTGAGTTTATAAAACACACATTTGGTTGGATCAGGGGTCCAAAAAAAATGAAAATCATGGTTAGATATCTCCAATCCAATAGTGGTATCAAGCTCTCCTCTGGAGTGTGTGTTTCTCGATATTTTGGATTTGTTATACCAACAAGGGTGACACTTAGCTATGTGATTGAAGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCTCAGGCAACTTTGAAAAGGAAACATCAAAAGGAGATATTAGGCAATAATGATGATCAAGATGAGTCAAATTCCAATAGGTGCAAGAGACCTAAAGGCAACAAACAAGCTGTGTATTTGAAGTCCCCCCCTCCATGTCAAAAACAGAAAATTTTGAAGTCTACCCCAAAGGAATTAAGCAAACAACGACACCCAAATTTGAAGATTCGTGCATCTCAGAAAAAAAAAGATTTGAAATCCACACCAAAGAAATCAAACAAACAACATCAGTATAAGCATTCAAGGAGACCAGCCATTGTAAAGCTGAATCCTGATGGAAGCTATGGTTGGGAGAAGATTGTAACTAGAGCTGGTGCAGCCGATGCAAGACCTCAAGTCATGCATTTTCCTAAGCAATTTTCTAGATTGTTTTTGGGAAAAAAACAAAACAAAGTGTTGGTCCAAGCTGAAGCAGGAGATACATTCTCTTGCAAGATTATGACAGCGACAAGGAATAGAGATGAAAAATACATATCAAAAGAGTGGACCAAATTTGTGAGAAGAAACAACCTTCAAGTTGGAGACAAGCTCATTTTCACTCTTCAAAACCAACCAACAAAACTCCTGATTCAGATCATCCATTGTAGTGTGCACGATTGA 999 0.3774 MASTSRRLPTPQEREKWKHIFDTIIDPNLAPIEIPQPFFHKMKGEFIKHTFGWIRGPKKMKIMVRYLQSNSGIKLSSGVCVSRYFGFVIPTRVTLSYVIEENTFWMRIYPPLQPVKTEFPPQATLKRKHQKEILGNNDDQDESNSNRCKRPKGNKQAVYLKSPPPCQKQKILKSTPKELSKQRHPNLKIRASQKKKDLKSTPKKSNKQHQYKHSRRPAIVKLNPDGSYGWEKIVTRAGAADARPQVMHFPKQFSRLFLGKKQNKVLVQAEAGDTFSCKIMTATRNRDEKYISKEWTKFVRRNNLQVGDKLIFTLQNQPTKLLIQIIHCSVHD 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01025 332 MobiDBLite consensus disorder prediction 174 199 - -
Trre15g01025 332 SMART B3_2 231 329 IPR003340 GO:0003677
Trre15g01025 332 MobiDBLite consensus disorder prediction 125 217 - -
Trre15g01025 332 MobiDBLite consensus disorder prediction 200 216 - -
Trre15g01025 332 ProSiteProfiles B3 DNA-binding domain profile. 232 329 IPR003340 GO:0003677
Trre15g01025 332 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 133 327 IPR044837 -
Trre15g01025 332 CDD B3_DNA 247 326 IPR003340 GO:0003677
Trre15g01025 332 MobiDBLite consensus disorder prediction 125 149 - -
Trre15g01025 332 Gene3D - 166 330 IPR015300 -
Trre15g01025 332 Pfam B3 DNA binding domain 247 326 IPR003340 GO:0003677
Trre15g01025 332 SUPERFAMILY DNA-binding pseudobarrel domain 245 323 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01025 Trre-Chr15 8010835 8012596 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g01025 B3 6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01025 - K13108 tpra:123904760 195.282