Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01013 ATGAGCCCTGCTGCCCAGACTGTGGCGGCCGACAACAACGGCGGGTTCCGGTCACACAAGAAGAAGAATAAGAAGAAGAATTTTAATACTGCTTCTTCATTGGGTAAAAGAAAAGGTGATGATGATTTCAGAAAGGAAAAACCTAATAAGAAGTCCAAAAAAAGGTCTCAGTTGAGTAGTGATAATGATAATAATGATAGTGATGATAATAAAGTTGTAGCAGTAGAAAATGGTGGTGCTGCTGATGGTGGTTCTGGAATTATTGGAGGAGACTCTTATTTAAGTGATTCCAGATTTGACCAGTGTTCAGTCTCTCCACTTTCATTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACCATTGTTCAGGAGGCAACACTTCCAGTAATTCTAAAAGGTAAGGATGTCCTGGCCAAGGCTAAAACAGGAACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGCTGTTGTGAAGTCTCCGCCAAGTGATCGTAATCAAATGCGTAAACCAATTCTTGTTCTTATCATATGCCCAACACGAGAGCTTGCATGTCAAGCTGCTGCAGAAGCCACTAAACTGCTCAAGTATCATCCTACCATTGGTGCTCAAGTTGTGATTGGAGGAACAAATCTTAGTGTAGAACAGAAGCGAATTCAAAAAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCACATTGATAGTACTGCTGGTTTTCCTTCTAGGCTTATGGGGGTTAAGACCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGATATTGATAAAATAATTGCTGCAGTTCCTAAACAACGACAAACACTTATGTTTTCTGCAACCATTCCGGATGCGGTGCATCAAGTCTGTAAAATTGCTTTGAAAAAGGATTTTGAATTTATCAATACAGTTCAGGAGGGTACTGAGGAGACACATGCAAAGGTCCGCCAGATGCATTTAATTGCCCCGCTAGACAAACATTTCTCTTTACTTTATGCTATTCTGAAGGAGCACATTGCCGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTGGTCTCCTTGGGAAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTTTCTGATGAATTCCGGAGGTCAAAGCGTCTCATCCTAGTCACTTCGGATGTATCCGCACGTGGAGTTGATTATCCAGATGTTTCTCTTGTTGTACAGGTTGGCCTACCATCTGATAAACAACAGTACATACATCGACTGGGTAGAACGGGGCGAAAAGGAAAAGAAGGGCAAGGCATACTGCTGCTAGCTCCTTGGGAAGAGTTCTTTTTAGATTCTGCAAAAGATTTGCCTATTGGGAAAGCTCCAGTACCTTCTGTTGATCCTGAGACTAAGAAAAAGGTGGATAGGGCTATATCCAATGTCGAGATGGATGATAAAGAAAGAGCATATCAAGCATGGCTTGGTTACTACAATTCCAACAAGAAAGTGGGGAAAGATAAGCGTAAGTTAGTGGAGCTTGCGAACGAGTTCAGTCGAAGCATGGGGCTTGATACCCCTCCAGCTGTTGCTATGCTTGTCCTTCGCAAGATGGGTCTTCAAAATGCCCCTGGTTTACGTTCCAAATAG 1698 0.4205 MSPAAQTVAADNNGGFRSHKKKNKKKNFNTASSLGKRKGDDDFRKEKPNKKSKKRSQLSSDNDNNDSDDNKVVAVENGGAADGGSGIIGGDSYLSDSRFDQCSVSPLSLKGIKDAGYEKMTIVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEAVVKSPPSDRNQMRKPILVLIICPTRELACQAAAEATKLLKYHPTIGAQVVIGGTNLSVEQKRIQKNPCQILVATPGRLRDHIDSTAGFPSRLMGVKTLVLDEADHLLDMGFRKDIDKIIAAVPKQRQTLMFSATIPDAVHQVCKIALKKDFEFINTVQEGTEETHAKVRQMHLIAPLDKHFSLLYAILKEHIADDVDYKVLVFCTTAMVTRLVAGLLGKLNLNVREIHSRKPQSYRTRVSDEFRRSKRLILVTSDVSARGVDYPDVSLVVQVGLPSDKQQYIHRLGRTGRKGKEGQGILLLAPWEEFFLDSAKDLPIGKAPVPSVDPETKKKVDRAISNVEMDDKERAYQAWLGYYNSNKKVGKDKRKLVELANEFSRSMGLDTPPAVAMLVLRKMGLQNAPGLRSK 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01013 565 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 128 311 IPR014001 -
Trre15g01013 565 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 97 125 IPR014014 GO:0003724
Trre15g01013 565 MobiDBLite consensus disorder prediction 35 70 - -
Trre15g01013 565 CDD SF2_C_DEAD 326 459 - -
Trre15g01013 565 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 491 IPR001650 -
Trre15g01013 565 MobiDBLite consensus disorder prediction 1 78 - -
Trre15g01013 565 Pfam DEAD/DEAH box helicase 123 299 IPR011545 GO:0003676|GO:0005524
Trre15g01013 565 PANTHER RNA HELICASE 38 497 - -
Trre15g01013 565 Pfam Helicase conserved C-terminal domain 342 450 IPR001650 -
Trre15g01013 565 Gene3D - 320 545 IPR027417 -
Trre15g01013 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 465 IPR027417 -
Trre15g01013 565 SMART helicmild6 369 450 IPR001650 -
Trre15g01013 565 CDD DEADc_MSS116 104 313 - -
Trre15g01013 565 SMART ultradead3 116 329 IPR014001 -
Trre15g01013 565 Gene3D - 46 312 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01013 Trre-Chr15 7914945 7920662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01013 97 478 Eukaryotic Initiation Factors Gene Family AT3G19760 27.877 6.20e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01013 - - gmx:100799999 807.364