LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g01012	ATGCCCACAAAAATCTTCTTATCACAACTCCGTCTTCTTCATTTCCAACCAATGAAACTTCACTCTCCTCAATTTCTATCTCAATCTCTCTTCAAATTCTCTCATCTTCCACTCCGAAACGCTGCGTTTCGTCCTTTCTCCGTTAAACCAGATAGAATTAGGGTTTCTAAAAGCCTCGTTGATGATGAGGCTGAGCTTAGTAATTGGGTCGATGATTTGCGAACTGGTAGAGCTGAGACCGTGAAACCTGCTCAGAGAGTGGGTTCTAGCCGTGATAGAGACGGTGGGTTTCGGCCACGGAAGAGTAGTGTTAGTAGAAGTTCTAATTTTGCCAAGAGAAAACCTTATTTGAATTCGAATTCGAAGAAAAGATTTGGATTGAGTAGTGATGATGATGATGATGACAAGGAGGTGGTTGAAAGAGGAAAGTTTAAGGGTGATGGTGGTGGTGGTTCTGGAAGTATTGGTGAATTTCTTAGTGAAGATGATTTTGAAGGAGAATCAGAGAGTGATGATAATGATGATGAGGAGATAGTTAACAAAAGTAGAAGTGTTTTGTTTGGCAAACAAAATGAGGTGTCAACAACTCCTAGACCTTCTTCACCTGGTGGAAGTGATTCTTATTTAAGTGATTCTAGATTCGATCAATGTTCAGTTTCACCATTATCATTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACACTTCCAGTAATTCTACAAGGTAAGGATGTTCTGGCCAAGGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCAGCCATTGAAGTTGTTGTGAAGTCTCCACCAGCTGATCGTGATCAAAGGCGGCCACCAATTTTTGTTCTTGTCATATGTCCTACTCGAGAGCTTGCATGTCAAGCTGCTGCCGAAGCCACTAAACTGCTTAAGTACCATCCTACCTTAGGTGTTCAAGTTGTGATCGGAGGAACAAGACTTGCTTTAGAACAGAAACGCATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACCCCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTGCATCTAGGCTTATGGGGGTGAAAGCCTTGGTGCTTGATGAAGCTGATCATTTACTGGACATGGGATTTCGCAAAGATATTGAAAAAATAATTGCTGCAATCCCTAAACAACGACAAACACTTATGTTTTCTGCAACCATTCCGGACGAGGTGCGTCAAGTTTGTCATGTTGCTTTGAAAAGGGATTTTGAATATATTAATACAGTTCAAGAGGGTTCTGAGGATACACATGCACAGGTCCGCCAAATGCATTTAGTTGCACCATTAGACAAGCATTTCCCTTTACTCTATGCTATTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACTACTGCTATGGTCACAAGACTTGTTGCTGATCTCCTTGGGGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTACAGAACCAGAGTTTCTGACGAATTCCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCGGATGTATCTGCACGTGGAGTTGATTATCCAGATGTTACTCTTGTTGTACAGGTTGGACTACCGGCTGATAGAGAACAGTATATACATCGACTAGGTAGAACAGGGAGAAGAGGAAAAGAAGGGCAAGGCATACTGCTATTAGCTCCTTGGGAAGAGTTCTTTTTAGCTACCGCAAAAGATTTGCCTATTGGGAAAGCTCCAGTACCTTCAGTTGATCCTGACACCAAGAAAAAGGTGGAAAGGGCTCTATCCAATGTAGAAATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAACTCTAACAAGAAAGTGGGGAAAGATAAGTTTAGGTTAGTCGAGCTTGCAAACGAGTTCAGTCGATGCATGGGGCTCGATACCCCTCCAGCCATTCCTAAGCTTGTCCTCGGCAAGATGGGTCTTAAAAATGTCCCTGGTTTACGTTCCAAATAG	2043	0.4234	MPTKIFLSQLRLLHFQPMKLHSPQFLSQSLFKFSHLPLRNAAFRPFSVKPDRIRVSKSLVDDEAELSNWVDDLRTGRAETVKPAQRVGSSRDRDGGFRPRKSSVSRSSNFAKRKPYLNSNSKKRFGLSSDDDDDDKEVVERGKFKGDGGGGSGSIGEFLSEDDFEGESESDDNDDEEIVNKSRSVLFGKQNEVSTTPRPSSPGGSDSYLSDSRFDQCSVSPLSLKGIKDAGYEKMTVVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVVVKSPPADRDQRRPPIFVLVICPTRELACQAAAEATKLLKYHPTLGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFASRLMGVKALVLDEADHLLDMGFRKDIEKIIAAIPKQRQTLMFSATIPDEVRQVCHVALKRDFEYINTVQEGSEDTHAQVRQMHLVAPLDKHFPLLYAILKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLATAKDLPIGKAPVPSVDPDTKKKVERALSNVEMKNKEAAYQAWLGYYNSNKKVGKDKFRLVELANEFSRCMGLDTPPAIPKLVLGKMGLKNVPGLRSK	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g01012	680	Pfam	Helicase conserved C-terminal domain	460	565	IPR001650	-
	Trre15g01012	680	SMART	ultradead3	231	444	IPR014001	-
	Trre15g01012	680	CDD	SF2_C_DEAD	441	574	-	-
	Trre15g01012	680	MobiDBLite	consensus disorder prediction	160	175	-	-
	Trre15g01012	680	SMART	helicmild6	484	565	IPR001650	-
	Trre15g01012	680	MobiDBLite	consensus disorder prediction	125	144	-	-
	Trre15g01012	680	MobiDBLite	consensus disorder prediction	101	124	-	-
	Trre15g01012	680	Gene3D	-	174	427	IPR027417	-
	Trre15g01012	680	MobiDBLite	consensus disorder prediction	86	100	-	-
	Trre15g01012	680	MobiDBLite	consensus disorder prediction	80	210	-	-
	Trre15g01012	680	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	461	611	IPR001650	-
	Trre15g01012	680	PANTHER	RNA HELICASE	176	609	-	-
	Trre15g01012	680	MobiDBLite	consensus disorder prediction	184	210	-	-
	Trre15g01012	680	Pfam	DEAD/DEAH box helicase	237	414	IPR011545	GO:0003676\|GO:0005524
	Trre15g01012	680	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	243	426	IPR014001	-
	Trre15g01012	680	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	212	240	IPR014014	GO:0003724
	Trre15g01012	680	Gene3D	-	436	659	IPR027417	-
	Trre15g01012	680	CDD	DEADc_MSS116	219	428	-	-
	Trre15g01012	680	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	289	580	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g01012	Trre-Chr15	7908340	7913569	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g01012	212	593	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.321	2.84e-45	165

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g01012	-		-	gmx:100795739	954.51