Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01008 ATGATTAAAATGAAAAGGAAGAAGATCCCATCCAAGTTGATTCTGGATGTTCCTACAAGAAAGACAACCTATAATTATAGATTAAAAGGGTTGTTCGCAAAAATGGATCAAATGAAAACCCTGTGTAATATTGAGGCATGTGCACTTGCGCTTGGTCCAGGTGATAGAAAACCTTCAATTTGGCCATCTGAAAATATAGCTAAAGATCTCATAAAAAAATTTGAGTCATTGTCAATTTCTGTTCAATCAAAAAATAGGACCGACCAATTGATTTTTTTGAAGGACAAGGAGAAAAAACTTGAATCAAACCTTGCAAAGATCAACAAAGGTAATGAAGAGATATTAATGGGATTTTTCATGCAGCAAATTATAAATGAAGGTAAGTGTTTTAATGATTTTGATATTAATCAGAAGAATTGCTTGATTAATTTTATGCTTGAAAAAATTAAGATTGCTAGAAAAGGACTTAGGCTTGCAGTGTTATCTCTTAATAATCTTCCTCCTCCACCAGTGGCGGATCCAGGAATTTTTTTTCCGGGGGGCCACTAA 549 0.337 MIKMKRKKIPSKLILDVPTRKTTYNYRLKGLFAKMDQMKTLCNIEACALALGPGDRKPSIWPSENIAKDLIKKFESLSISVQSKNRTDQLIFLKDKEKKLESNLAKINKGNEEILMGFFMQQIINEGKCFNDFDINQKNCLINFMLEKIKIARKGLRLAVLSLNNLPPPPVADPGIFFPGGH 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01008 182 SMART madsneu2 4 63 IPR002100 GO:0003677|GO:0046983
Trre15g01008 182 Coils Coil 93 113 - -
Trre15g01008 182 SUPERFAMILY SRF-like 6 98 IPR036879 GO:0003677|GO:0046983
Trre15g01008 182 ProSiteProfiles MADS-box domain profile. 4 56 IPR002100 GO:0003677|GO:0046983
Trre15g01008 182 CDD MADS_SRF_like 5 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre15g01008 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 55 IPR002100 GO:0003677|GO:0046983
Trre15g01008 182 Gene3D - 16 100 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01008 Trre-Chr15 7863985 7864533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01008 4 139 Type I MADS-box Gene Family AT3G05860 32.117 2.23e-16 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre15g01008 SRF-TF 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01008 - K04308 mtr:25491525 195.667