Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01006 ATGAGTCCAAAGGAAAAGAAATTTGTGAGATTTGAAGATTGGAAGTCAGAGTCATCATCTTTTAATTTTTCACAATATGATTCTTCAATTGATGGATTTGAAAAAAGAAAATCAAAATCAATTGTTACTCCTACAAAAAATAATGAATCATTGAACAAACAATCTCCTAGGTGTAGTGTTCTTGATCCACAAGCAATGAGATACTTAAGTTCTCATTTCATCATTGACATTCTATCAATTCTTCCACTTCCTCAGATGGTGATTTTAGCTATGATTCCAATTCCACAATGCTCAGTTCCTTATATAGCAAAGGATTGGTTGAAGTATACAATAATAACACAATATGCGCCGAGACTTCTGCGAATCTATCCTTTGTTTAAAGAAGTAACAAGCACTTCTGGTATATTAACTGAGACAGCATGGGTTGGAGCTGCTTATAATCTTTTTCTTTACATGCTAGCAAGTCATGTTGTTGGAGCTTTTTGGTATTTGTTTTCGATAGAATCAGAGTTGCGGTGTTGGCGCAGACAATTGAAGAATACTGCATTCTTCAATGATTCCTATTTGAGTTGTGGACGAGTCAATTTGAAACTTTTTTCTATTCTCAACAATTCTACTACTTGTCCTTACAAAGATCCTGATGCTATCATTGATCCAACAATTTTCAATTTTGGAATATTTATTGATGCGCTAACGTCGCGTGTGGTAGAATTGAATACAAGCTTTCATCATAAATTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTGTTGGGCAGAATCTGAAGACAAGCACTTATATTGGGGAGATAATCTTTGCTATCTTCATCGCCGTCTTTGGATTGGTCCTATTCGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAATGGATGTGCCACCGTATGCTACCGGAGTACTTGAAAGAAAGAATTCGACGTTATGAACAATACAAATGGCAAGAAAATAGAGGTGTCGAAGAGGAGAATTTGATTCGCAACCTCCCTAAAGATCTCAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTACTTAAAAAAGTGCCGATTTTTGGGAGCATGGATGAAAAATTGTTGGATGCAATGTGTGATAAACTAAAACCAGTCCTATATACCGAGAAAAGTTGTGTTGTTCGTGAAGAAAACAACTCCAACACACTTTTAGGTTCTATTCGTTGCAATGGAGGATATGGGGAGCGCGGTTCATACAAGTAG 1296 0.3627 MSPKEKKFVRFEDWKSESSSFNFSQYDSSIDGFEKRKSKSIVTPTKNNESLNKQSPRCSVLDPQAMRYLSSHFIIDILSILPLPQMVILAMIPIPQCSVPYIAKDWLKYTIITQYAPRLLRIYPLFKEVTSTSGILTETAWVGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRRQLKNTAFFNDSYLSCGRVNLKLFSILNNSTTCPYKDPDAIIDPTIFNFGIFIDALTSRVVELNTSFHHKFFYCFWWGLRNLSSVGQNLKTSTYIGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMCHRMLPEYLKERIRRYEQYKWQENRGVEEENLIRNLPKDLRRDIKRHLCLDLLKKVPIFGSMDEKLLDAMCDKLKPVLYTEKSCVVREENNSNTLLGSIRCNGGYGERGSYK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01006 431 SUPERFAMILY Voltage-gated potassium channels 63 299 - -
Trre15g01006 431 Gene3D Jelly Rolls 365 416 IPR014710 -
Trre15g01006 431 Gene3D Helix hairpin bin 304 364 - -
Trre15g01006 431 Pfam Ion transport protein 65 305 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre15g01006 431 Gene3D - 55 301 - -
Trre15g01006 431 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 63 413 - -
Trre15g01006 431 FunFam Cyclic nucleotide-gated ion channel 1 304 368 - -
Trre15g01006 431 SUPERFAMILY cAMP-binding domain-like 306 413 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01006 Trre-Chr15 7854010 7857640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01006 65 423 Ion Channels AT1G01340 64.402 8.85e-166 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01006 K05391 - gmx:100795201 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05346 13 58405978 58409277 Trre15g01006 15 7854010 7857640 PCT