Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01005 ATGAGTCCAAAGGAAAAGAAATTTGTGAGATTTGAAGATTGGAAGTCAGAGTCATCATCTTTTAATTTTTCACAATATGATTCTTCAATTGATGGATTTGAAAAAAGAAAATCAAAATCAATTGTTACTCCTACAAAAAATAATGAATCATTGAACAAACAATCTCCTAGGTGTAGTGTTCTTGATCCACAAGCAATGAGATACTTAAGTTCTCATTTCATCATTGACATTCTATCAATTCTTCCACTTCCTCAGATGGTGATTTTAGCTATGATTCCAATTCCACAATGCTCAGTTCCTTATATAGCAAAGGATTGGTTGAAGTATACAATAATAACACAATATGCGCCGAGACTTCTGCGAATCTATCCTTTGTTTAAAGAAGTAACAAGCACTTCTGGTATATTAACTGAGACAGCATGGGTTGGAGCTGCTTATAATCTTTTTCTTTACATGCTAGCAAGTCATGTTGTTGGAGCTTTTTGGTATTTGTTTTCGATAGAATCAGAGTTGCGGTGTTGGCGCAGACAATTGAAGAATACTGCATTCTTCAATGATTCCTATTTGAGTTGTGGACGAGTCAATTTGAAACTTTTTTCTATTCTCAACAATTCTACTACTTGTCCTTACAAAGATCCTGATGCTATCATTGATCCAACAATTTTCAATTTTGGAATATTTATTGATGCGCTAACGTCGCGTGTGGTAGAATTGAATACAAGCTTTCATCATAAATTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTGTTGGGCAGAATCTGAAGACAAGCACTTATATTGGGGAGATAATCTTTGCTATCTTCATCGCCGTCTTTGGATTGGTCCTATTCGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAATGGATGTGCCACCGTATGCTACCGGAGTACTTGAAAGAAAGAATTCGACGTTATGAACAATACAAATGGCAAGAAAATAGAGGTGTCGAAGAGGAGAATTTGATTCGCAACCTCCCTAAAGATCTCAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTACTTAAAAAAGTGCCGATTTTTGGGAGCATGGATGAAAAATTGTTGGATGCAATGTGTGATAAACTAAAACCAGTCCTATATACCGAGAAAAGTTGTGTTGTTCGTGAAGAAGTTGAAGCTTTTGCTCTCATGCATGATGACTTGAAGATTGTTGCTTCTCAATTTCGCCGTCTTATTAACAGAAAACAACTCCAACACACTTTTAGGTTCTATTCGTTGCAATGGAGGATATGGGGAGCGCGGTTCATACAAGTAGTTTGGCGTCGAAATAGAGAAAAAAGGGCTCATAAATTGTTACGTGAAGCGGAAGAAAAACAACAAAATGCTTCTGAAAATGAGGGAGAGACTTCACCAAGCTTTGGTTCCACTATATATGTACAAAGGTTTGCATCCAATGCATTAAGGAGTTTAAGAAGTGGCAAAAGAATGCCACAGACAAAGAGATTGCTACCACTCTTGCCTAAGAAACCAAAAGAGCCAGATTTCAATACTCATAAAAACTAG 1617 0.3661 MSPKEKKFVRFEDWKSESSSFNFSQYDSSIDGFEKRKSKSIVTPTKNNESLNKQSPRCSVLDPQAMRYLSSHFIIDILSILPLPQMVILAMIPIPQCSVPYIAKDWLKYTIITQYAPRLLRIYPLFKEVTSTSGILTETAWVGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRRQLKNTAFFNDSYLSCGRVNLKLFSILNNSTTCPYKDPDAIIDPTIFNFGIFIDALTSRVVELNTSFHHKFFYCFWWGLRNLSSVGQNLKTSTYIGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMCHRMLPEYLKERIRRYEQYKWQENRGVEEENLIRNLPKDLRRDIKRHLCLDLLKKVPIFGSMDEKLLDAMCDKLKPVLYTEKSCVVREEVEAFALMHDDLKIVASQFRRLINRKQLQHTFRFYSLQWRIWGARFIQVVWRRNREKRAHKLLREAEEKQQNASENEGETSPSFGSTIYVQRFASNALRSLRSGKRMPQTKRLLPLLPKKPKEPDFNTHKN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01005 538 Gene3D Jelly Rolls 365 415 IPR014710 -
Trre15g01005 538 Gene3D - 55 301 - -
Trre15g01005 538 Gene3D Helix hairpin bin 304 364 - -
Trre15g01005 538 Pfam Ion transport protein 65 305 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre15g01005 538 SUPERFAMILY Voltage-gated potassium channels 63 299 - -
Trre15g01005 538 Coils Coil 459 486 - -
Trre15g01005 538 FunFam Cyclic nucleotide-gated ion channel 1 304 368 - -
Trre15g01005 538 MobiDBLite consensus disorder prediction 507 538 - -
Trre15g01005 538 MobiDBLite consensus disorder prediction 523 538 - -
Trre15g01005 538 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 407 533 - -
Trre15g01005 538 SUPERFAMILY cAMP-binding domain-like 306 407 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01005 Trre-Chr15 7853762 7857640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01005 408 536 Ion Channels AT1G01340 49.635 5.40e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01005 K05391 - gmx:100795201 567.385