Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01002 ATGGCCATCTTGAAGGTTCTTTTTTACTTAATATTTCCTGTCATACATGCCTTTAACGATTGCCCAGTTTCTTTATGTGGTAACTTTAGTTTACCTATTCGTTATCCCTTTATGCTAGAAGGTGAGCAATCTCCTTATTGTGGTTATCCTGGTTTCAACTTAAGTTGTTCAAATCAAAGAAAATCAGTTCTAAAACTTCCTTATTCTGGCGAATTCTATGTACGCAATATAAACTATCTCACACAACAGATACAACTCTATGATCCTGATAATTGTCTTCCCAAACGTCTTCTAAGTCTCAATTTTTCAAATTCTCCTTTCGTTGCTACTTTTAGTCGCGACTACACCTTCTTAAGCTGTAAATCTCATGATACAGGGTCACCATTCATTCCCATTGATTGTCTTAGTAATTCAACATATATTGTATCAGCTATTCTTTCTGTGAACTTGATAAATTCACTTCCTGAGTCTTGTTCTGTTATAAAAAGGCTTTTAGTTCCTGTTGCAAGAAAAGAACGATTCGGAGAAAATCTCAGAGATGATCTAAATGCAGATCTTCAATTAACATGGGATAAACCTGACTGCAGTGTTTGTGAAACACAAGGGCTAATGTGTGGATTAGAAGGCATTTACACCGATCAAGTTGTTTGTATGTCTGATAACCAAGAAGGTGCATCACGACAAGGACTTACAGTTTTCAGAATCATAGCATTATGTATTACTGGACCAGCCCTAATCTTTGTCATGTTAATGGCAACTTGTGTGTGCTACAACGATAGAATAGCCAACATTACCAGAAATGCTGTTTCTCGGTCGGCACCAGTTGCAATATCACCACAACCTGAAGTCACAATAGCTACAGGTCTAGACGAATCGACAATTGAATCTTATGAGAAAGTAGTTCTTGGTGAGAGCCGACGTGTACCTGGACCGAATGACGGATGTTGTTGGATATGCTTATCAGAATACAATAGTAAAGAGACAGTAAGATGCATTCCTGAATGCAAACATTGTTTTCATGCCGATTGCATTGATGAGTGGCTTCGTATGAATATTACATGCCCAGTTTGTCGTAATTCTCCTGCTCCTTCTCCTCTAAATGTTGCTTCTAGTGATGTTTGA 1122 0.3779 MAILKVLFYLIFPVIHAFNDCPVSLCGNFSLPIRYPFMLEGEQSPYCGYPGFNLSCSNQRKSVLKLPYSGEFYVRNINYLTQQIQLYDPDNCLPKRLLSLNFSNSPFVATFSRDYTFLSCKSHDTGSPFIPIDCLSNSTYIVSAILSVNLINSLPESCSVIKRLLVPVARKERFGENLRDDLNADLQLTWDKPDCSVCETQGLMCGLEGIYTDQVVCMSDNQEGASRQGLTVFRIIALCITGPALIFVMLMATCVCYNDRIANITRNAVSRSAPVAISPQPEVTIATGLDESTIESYEKVVLGESRRVPGPNDGCCWICLSEYNSKETVRCIPECKHCFHADCIDEWLRMNITCPVCRNSPAPSPLNVASSDV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01002 373 CDD RING-H2_EL5-like 315 358 - -
Trre15g01002 373 SMART ring_2 316 357 IPR001841 -
Trre15g01002 373 Pfam Ring finger domain 316 358 IPR001841 -
Trre15g01002 373 SUPERFAMILY RING/U-box 309 361 - -
Trre15g01002 373 ProSitePatterns Zinc finger PHD-type signature. 316 357 IPR019786 -
Trre15g01002 373 Pfam Wall-associated receptor kinase C-terminal 152 220 IPR032872 -
Trre15g01002 373 ProSiteProfiles Zinc finger RING-type profile. 316 358 IPR001841 -
Trre15g01002 373 Pfam Wall-associated receptor kinase galacturonan-binding 21 88 IPR025287 GO:0030247
Trre15g01002 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 363 IPR013083 -
Trre15g01002 373 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 361 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01002 Trre-Chr15 7842228 7844902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01002 19 364 C3H Transcription Factor Family AT2G46495 45.042 1.25e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01002 - - aprc:113851081 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01002 15 7842228 7844902 Trre15g01002 15 7842228 7844902 ECH
Trre13g05356 13 58437680 58438690 Trre15g01002 15 7842228 7844902 PCT