Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g01002 | ATGGCCATCTTGAAGGTTCTTTTTTACTTAATATTTCCTGTCATACATGCCTTTAACGATTGCCCAGTTTCTTTATGTGGTAACTTTAGTTTACCTATTCGTTATCCCTTTATGCTAGAAGGTGAGCAATCTCCTTATTGTGGTTATCCTGGTTTCAACTTAAGTTGTTCAAATCAAAGAAAATCAGTTCTAAAACTTCCTTATTCTGGCGAATTCTATGTACGCAATATAAACTATCTCACACAACAGATACAACTCTATGATCCTGATAATTGTCTTCCCAAACGTCTTCTAAGTCTCAATTTTTCAAATTCTCCTTTCGTTGCTACTTTTAGTCGCGACTACACCTTCTTAAGCTGTAAATCTCATGATACAGGGTCACCATTCATTCCCATTGATTGTCTTAGTAATTCAACATATATTGTATCAGCTATTCTTTCTGTGAACTTGATAAATTCACTTCCTGAGTCTTGTTCTGTTATAAAAAGGCTTTTAGTTCCTGTTGCAAGAAAAGAACGATTCGGAGAAAATCTCAGAGATGATCTAAATGCAGATCTTCAATTAACATGGGATAAACCTGACTGCAGTGTTTGTGAAACACAAGGGCTAATGTGTGGATTAGAAGGCATTTACACCGATCAAGTTGTTTGTATGTCTGATAACCAAGAAGGTGCATCACGACAAGGACTTACAGTTTTCAGAATCATAGCATTATGTATTACTGGACCAGCCCTAATCTTTGTCATGTTAATGGCAACTTGTGTGTGCTACAACGATAGAATAGCCAACATTACCAGAAATGCTGTTTCTCGGTCGGCACCAGTTGCAATATCACCACAACCTGAAGTCACAATAGCTACAGGTCTAGACGAATCGACAATTGAATCTTATGAGAAAGTAGTTCTTGGTGAGAGCCGACGTGTACCTGGACCGAATGACGGATGTTGTTGGATATGCTTATCAGAATACAATAGTAAAGAGACAGTAAGATGCATTCCTGAATGCAAACATTGTTTTCATGCCGATTGCATTGATGAGTGGCTTCGTATGAATATTACATGCCCAGTTTGTCGTAATTCTCCTGCTCCTTCTCCTCTAAATGTTGCTTCTAGTGATGTTTGA | 1122 | 0.3779 | MAILKVLFYLIFPVIHAFNDCPVSLCGNFSLPIRYPFMLEGEQSPYCGYPGFNLSCSNQRKSVLKLPYSGEFYVRNINYLTQQIQLYDPDNCLPKRLLSLNFSNSPFVATFSRDYTFLSCKSHDTGSPFIPIDCLSNSTYIVSAILSVNLINSLPESCSVIKRLLVPVARKERFGENLRDDLNADLQLTWDKPDCSVCETQGLMCGLEGIYTDQVVCMSDNQEGASRQGLTVFRIIALCITGPALIFVMLMATCVCYNDRIANITRNAVSRSAPVAISPQPEVTIATGLDESTIESYEKVVLGESRRVPGPNDGCCWICLSEYNSKETVRCIPECKHCFHADCIDEWLRMNITCPVCRNSPAPSPLNVASSDV | 373 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g01002 | 373 | CDD | RING-H2_EL5-like | 315 | 358 | - | - | |
Trre15g01002 | 373 | SMART | ring_2 | 316 | 357 | IPR001841 | - | |
Trre15g01002 | 373 | Pfam | Ring finger domain | 316 | 358 | IPR001841 | - | |
Trre15g01002 | 373 | SUPERFAMILY | RING/U-box | 309 | 361 | - | - | |
Trre15g01002 | 373 | ProSitePatterns | Zinc finger PHD-type signature. | 316 | 357 | IPR019786 | - | |
Trre15g01002 | 373 | Pfam | Wall-associated receptor kinase C-terminal | 152 | 220 | IPR032872 | - | |
Trre15g01002 | 373 | ProSiteProfiles | Zinc finger RING-type profile. | 316 | 358 | IPR001841 | - | |
Trre15g01002 | 373 | Pfam | Wall-associated receptor kinase galacturonan-binding | 21 | 88 | IPR025287 | GO:0030247 | |
Trre15g01002 | 373 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 280 | 363 | IPR013083 | - | |
Trre15g01002 | 373 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 4 | 361 | IPR046948 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g01002 | Trre-Chr15 | 7842228 | 7844902 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g01002 | 19 | 364 | C3H Transcription Factor Family | AT2G46495 | 45.042 | 1.25e-91 | 277 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g01002 | - | - | aprc:113851081 | 527.324 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre15g01002 | 15 | 7842228 | 7844902 | Trre15g01002 | 15 | 7842228 | 7844902 | ECH | |
Trre13g05356 | 13 | 58437680 | 58438690 | Trre15g01002 | 15 | 7842228 | 7844902 | PCT |