Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01000 ATGGTAATTAAGCGTGCTGTGAAAACTGAAATGCCGAAATTGAAACGGTGTAAATTGGAGGAACCTGATTCTGAAGGTCTTGAAGGTTGTTCTGGGATTCAGAAGAAGCGTATGGTGAATGAGTTTTACTCGATAGGTGATGCTGATGATTTTAGCGGTGGTTCTGCTTCATGGAGCAGTGAAGTTTCGCATTGTGATGGTGGTGCTGGTGGTGGTGAGGTTGAGTTTAATTCAAATTCTGTGTTGTTGAATGGTAGTAAAACGGTGAAAGAGTTAGGCTCGGTGGTGGCTCGGCCTCCATCATTGCGATCCTCGCGCGGTCGTCCTCAGATGCTTCCGTCGAGGTTCAGTGACTCGGTTGTTGTTCTTGATGCATGGAAGAATCGAGGAGCAAAAACGGAGGATGGAGGTGGTGACGGTGATTCCAGCTTTGAAGATGATAGAAGTTTTGTTGAGGATGATATGGTTAAGAATAGTGATGTGAATTGTTTGAAAAATTCTGTGTGTTATCCGTGTGATGAAATGAAGGTTGATGAAAGGGAGGGTGGTGATTTGTCTAGTGTGGGTAGAAAGATGATGAAGACTGATAGTAATGCTTCTGGTTCTGGTCTTAGTTCTGAGGGTATAGAGCAGAAGACTTATGGGAATGTTGGAAAGAGAAAAGAGGTTTATAGGCCAGAGGATTTTGCTTTGGGCGATATTGTTTGGGCAAAATGCGGGAAGAGATATCCGGCTTGGCCTGCTGTGGTGATTGAACCCATGTCACAGGCTCCTTATTCCGTCTTGAACTGTCTTGTTCCTGATGCACTTTGTGTGATGTTTTTCGGTTATTCAAAAAATGGGACTCAAAGGGATTATGCATGGGTGAAGCAGGGAATGATATTCCCATTCTCGGAATTCTTGAACAGATTTCAGGGGCAGACCCAGTTGTACAAGAGCAAGCCGAGTGACTTCCAGATGGCGCTGGAGGAGGCAAAGTTGGCAGAAGATGGTATTCTGGAATCACATTTGGGAGCGGAGGAAGTGACAGATGTAGAAGCTCATCCTCCTGATAGACTTGAAGAGGTCTTAGTTTCAAATATCGATCAAGAATATTATTGTCAGGATCAGGATACTAGATGTTGTGCTACCTGTGGTTTGATGTTTCCATGCAAAACCATGAAGAAGGTTAAGGGTTCAAGTTATGCACTCCAATATCAATGCAAACTTTGTGCCAAGTTACTAAAATCAAAACAATATTGTGGAATTTGCAAAAAGATTTGGCACCACTCAGACGGTGGGAATTGGGTATGTTGTGACGGTTGCAATGTATGGGTGCATGCTGAGTGTGACAGAATTTCTACCGAACATTTCAAGGATCTGGAAAATACCGATTACTATTGTCCAGATTGCAAGGAAAGAATCAATTGTAAATTACCGGAATCACTAACACACACGTCAAAAATCAAACCAGTGGAGAATAGCCAAAATGGTGTGGTACCTGAGAAGGTAACGGTGGTGTGCAATGGAATGGAAGGAATTTACTTCCCTAAGCTTCATTTAATTATGTGCAAGTGTGTCTCTTGTGGTTCAAGGAAGCAGACACCGAGTGAATGGGAACGACATACTGGAAGCAGAGCCAAAAAATGGAAATACAGTGTGAAAGTGAAAAGCACAATGTTACCACTTGAAAAATGGATTGCGGAGCACATTTCGCAAGATGGAATTCCCCAGGAATTAGATCAGCAGCAGGTGCTTGCCTTTTTGCAAGAGAAGTATGAGCCAGTTCATGCAAAATGGACGACAGAAAGATGTGCTGTTTGTAGATGGGTTGAAGATTGGGACGATAACAGTATGATCATCTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGTGTAAGGGGTGTTCAAGATTTTACTTCTTGGGTCTGTAGAGTATGTGAAACTCCTGATGTTGAAAGAGAGTGTTGCCTTTGTCCAGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTCGAGATGTTGTGGGTCCATGTAACATGCGCTTGGTTTCGACATGAAGTTGTTTTCCAAAACCATTTGGCCATGGAACCTGCCGTTGGAATTCTAAGAATTCCTCCTAATTCCTTTGTGAAGACTTGTGTAATTTGTAAACAAAGCCATGGTTCTTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTAATGTGCGCATCAAGAGCTGGGTATACCATGGAATTGCATGGCATGGTGAAGAACGGGACTGAAATAACAAAGAAGCTAATATACTGCGCAGTTCATAGAGTCCCAAGTCCAGATTCTGTAATGGTTTCACATTCATCTCTGGGGATTTTCTCTCCTAGAACTTTGATTCAAAATCCCAAGGGATGCTTCCGGGGATCAAGGCTGGTTTCATCAAAAAATATAGAGCTCAATGAATTTTCAACCACTGAAAATGATAAGGTCGAGCCATTTTCTGCAGCCAGATGTCGTGTGTACCAGAGGTCTTGTAATAAGAAAGCTGATGTGCCAATAATTCACTTGCTGACGGGACCCAGCCATCACTCTTTAGGTGAAATAACTCAATTGAACAACTATGAGGATGCTAAAGTTTCTAAAGTATTTCCTTCTTTCAAGGAACGTCTTCACCATCTGCAGAAAACTGAAAAACTCAGAATTTGCTTTGGAAAGTCGGGTATTCATGGATGGGGTCTCTTTGCTCGAAGAGATATACAAGAAGGAGATATGGTTGTTGAGTATCTTGGTGAGCAGGTAAGGCGTAGTGTCGCCGATCTGAGGGAAGCAAAATATCGTTCAGAAGGCAAAGATTGCTATTTGTTCAAGATCAGTGAGGAAGTAGTCATTGATGCAACACGCAGGGGCAATATAGCACGTTTAATAAACCACTCTTGCATGCCAAACTGCCATGCAAGGATTTTGAGTTTAGGCAATCAACAGAACCGGATTGTTCTTATTGCAAAAACCAACGTTTCTGCTGGTCAAGAACTAACGTATGATTACAAGTTCGATCCAGATGAGCCGGAAGAACAGAAAGTTCCCTGCCTTTGCAGAGCACCAAATTGTAGAAAATTTATGAACTAG 3090 0.4249 MVIKRAVKTEMPKLKRCKLEEPDSEGLEGCSGIQKKRMVNEFYSIGDADDFSGGSASWSSEVSHCDGGAGGGEVEFNSNSVLLNGSKTVKELGSVVARPPSLRSSRGRPQMLPSRFSDSVVVLDAWKNRGAKTEDGGGDGDSSFEDDRSFVEDDMVKNSDVNCLKNSVCYPCDEMKVDEREGGDLSSVGRKMMKTDSNASGSGLSSEGIEQKTYGNVGKRKEVYRPEDFALGDIVWAKCGKRYPAWPAVVIEPMSQAPYSVLNCLVPDALCVMFFGYSKNGTQRDYAWVKQGMIFPFSEFLNRFQGQTQLYKSKPSDFQMALEEAKLAEDGILESHLGAEEVTDVEAHPPDRLEEVLVSNIDQEYYCQDQDTRCCATCGLMFPCKTMKKVKGSSYALQYQCKLCAKLLKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDRISTEHFKDLENTDYYCPDCKERINCKLPESLTHTSKIKPVENSQNGVVPEKVTVVCNGMEGIYFPKLHLIMCKCVSCGSRKQTPSEWERHTGSRAKKWKYSVKVKSTMLPLEKWIAEHISQDGIPQELDQQQVLAFLQEKYEPVHAKWTTERCAVCRWVEDWDDNSMIICNRCQIAVHQECYGVRGVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRHEVVFQNHLAMEPAVGILRIPPNSFVKTCVICKQSHGSCTSCCKCATYFHVMCASRAGYTMELHGMVKNGTEITKKLIYCAVHRVPSPDSVMVSHSSLGIFSPRTLIQNPKGCFRGSRLVSSKNIELNEFSTTENDKVEPFSAARCRVYQRSCNKKADVPIIHLLTGPSHHSLGEITQLNNYEDAKVSKVFPSFKERLHHLQKTEKLRICFGKSGIHGWGLFARRDIQEGDMVVEYLGEQVRRSVADLREAKYRSEGKDCYLFKISEEVVIDATRRGNIARLINHSCMPNCHARILSLGNQQNRIVLIAKTNVSAGQELTYDYKFDPDEPEEQKVPCLCRAPNCRKFMN 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01000 1029 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 468 IPR013083 -
Trre15g01000 1029 Pfam PWWP domain 232 328 IPR000313 -
Trre15g01000 1029 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1029 IPR025780 -
Trre15g01000 1029 Gene3D - 222 332 - -
Trre15g01000 1029 ProSiteProfiles PWWP domain profile. 231 300 IPR000313 -
Trre15g01000 1029 CDD PHD_TCF19_like 414 464 - -
Trre15g01000 1029 SUPERFAMILY Tudor/PWWP/MBT 222 341 - -
Trre15g01000 1029 SMART PostSET_3 1013 1029 IPR003616 -
Trre15g01000 1029 SUPERFAMILY FYVE/PHD zinc finger 410 473 IPR011011 -
Trre15g01000 1029 ProSiteProfiles Post-SET domain profile. 1013 1029 IPR003616 -
Trre15g01000 1029 FunFam Histone-lysine N-methyltransferase 862 1029 - -
Trre15g01000 1029 SUPERFAMILY SET domain 880 1026 IPR046341 -
Trre15g01000 1029 ProSiteProfiles Extended PHD (ePHD) domain profile. 649 764 IPR034732 -
Trre15g01000 1029 Gene3D - 491 572 IPR010919 -
Trre15g01000 1029 MobiDBLite consensus disorder prediction 191 207 - -
Trre15g01000 1029 CDD PHD_ATX3_4_5_like 597 643 IPR042011 -
Trre15g01000 1029 ProSiteProfiles Zinc finger PHD-type profile. 595 646 IPR019787 -
Trre15g01000 1029 MobiDBLite consensus disorder prediction 183 207 - -
Trre15g01000 1029 SUPERFAMILY FYVE/PHD zinc finger 595 660 IPR011011 -
Trre15g01000 1029 Pfam PHD-finger 610 644 - -
Trre15g01000 1029 SUPERFAMILY SAND domain-like 495 555 IPR010919 -
Trre15g01000 1029 ProSitePatterns Zinc finger PHD-type signature. 598 643 IPR019786 -
Trre15g01000 1029 SMART set_7 887 1010 IPR001214 GO:0005515
Trre15g01000 1029 FunFam Histone-lysine N-methyltransferase 647 766 - -
Trre15g01000 1029 Pfam PHD-finger 413 466 IPR019787 -
Trre15g01000 1029 SMART PHD_3 708 764 IPR001965 -
Trre15g01000 1029 SMART PHD_3 597 644 IPR001965 -
Trre15g01000 1029 SMART PHD_3 413 465 IPR001965 -
Trre15g01000 1029 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 765 IPR013083 -
Trre15g01000 1029 ProSiteProfiles Zinc finger PHD-type profile. 411 467 IPR019787 -
Trre15g01000 1029 ProSiteProfiles SET domain profile. 887 1004 IPR001214 GO:0005515
Trre15g01000 1029 CDD PWWP_AtATX3-like 232 331 - -
Trre15g01000 1029 Gene3D SET domain 800 1029 IPR046341 -
Trre15g01000 1029 SMART PWWP_4 229 298 IPR000313 -
Trre15g01000 1029 Pfam PHD-zinc-finger like domain 651 763 - -
Trre15g01000 1029 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 646 IPR013083 -
Trre15g01000 1029 Pfam SET domain 898 1003 IPR001214 GO:0005515
Trre15g01000 1029 CDD SET_SETD1-like 876 1025 - -
Trre15g01000 1029 PANTHER PHD FINGER PROTEINS 96 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01000 Trre-Chr15 7826252 7834780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01000 370 438 EF-hand Containing Proteins AT5G28340 53.623 5.67e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre15g01000 zf-HC5HC2H_2 2.8e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01000 - - gmx:100793624 1553.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01000 15 7826252 7834780 Trre15g01000 15 7826252 7834780 ECH