Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00979 ATGAAGATTGAAGTGGGTTTAGGAGGAAGTGGGTTATGGAATGAAGATGAAAAAGCTATGGTGGTTGAAGTTTTAGGTATTACTGCATTTGATTACTTGGTTACAAATTCAGTTTCAAATGAGAATCTTTTGATGGCAATTGGGAATAGTGAGAATCTTCAAAACAAGCTTTCTGATCTAGTTGAAAGATCCAACGTTTCAAATTTTAGTTGGAATTATGCAATTTTTTGGCAAATTTCTCAGTCAAAATATGGTGATTGGGTTTTAGGTTGGGGTGATGGATGTTGTAGAGAACCAAAGGAAGAAGAAGAAAAAGAAAATTTTGGAATGAAAAGTTTTCTTAGTCATAACCTTGTTGAGAATGAAAAACAACAAAGATTAAGGAAAAGGGTGTTGCAGAAGCTTCACACAACATTTGGTGGTTCAGATGAAGACAATTATGCTTTTGGGTTGGATCATGTTACTGATACAGAGATGTTCTTTCTTGCTTCAATGTATTTTTCTTTTCCTAATGGACATGGTGGACCAGGTAAGTGTTTTGCATCTGGGAAGCATTTGTGGCTATGTGATGCATTGAAATCAAATAGTTCTGATTATTGTGTTAGGTCTCATTTGGCTAAATCTGTTGGATTTCAAACTATTGTTTTAGTTCCTACTGATTTAGGTGTTGTTGAGTTGGGTTCTGTTAGAATGGTTGCTGAGAGCTTTGAATTGTTGCAAACTATTAAATCTGTGTTTTCATCACAATCATCGCTTTCTAGGGTTAATTCGATTTCGTCGTTGGACGAAAAGAGAGATGAGAATGCACCTTTTTCTAGTTTGAAAGTTGGGGAGATTATTAAGAACAATAATAGTTATGGTAATCTTCATCGTCATCAGAATAATGATCATGGTAGAGTAGAGGGGATTGGTGTTCCGAAGATTTTCGGGCAGGATTTGAACTCGGCGACACATTTTCGGGAGAAACTTGCTATTAGGAAAATGGATGAGAGACCATCATGGGGAGGCCGTCCGAATGGGAATGGAATTAGTTTTCCTAACGGTGTTCATGGTTCGGGTTGGAGAGGTAGTCAAGTTTTGAGGCAGCACGTGCCTGCGGATGCTTTTTCTCCTAGGCCTCCTTCTACGAGCAATGCGCCCGAGCTAGCCAATGGTGGTGGGAGGCATGATTTTGTGCTTAATAACTTTCAACAACAACGGAAGGCCCAAATGCAAATTGATTTCTCAGGAGCCACGTCGAGGCCTTCTGTGAGATCGATTGTTGGTGAATCAGAGCTTTCTGATGTTGAGGCCTCTTGCAGGGAGGATAAACCGAGTCCCTCTGATGACAGGAGACCGAGGAAGAGGGGCAGAAAGCCGGCAAATGGAAGAGAAGAACCGCTAAATCATGTGGAGGCAGAGAGGCAAAGACGCGAGAAGCTAAACCAGCGTTTTTACGCCTTACGAGCTGTTGTGCCAAATATTTCCAAGATGGACAAAGCATCTTTGTTGGGAGATGCTATTGCTTACATCAACGAGCTTCAAGCGAAACTCAAGCAGATGGAATCCGAGAGAGAGCAATTCGGAAGCACCTCCAGAGATGGATCATCATCAATATTGCCGGCAAATCCTATCACAGAAAATCATCAAAGTAGAGCCCCCGATATGGAAATTCAAGCTGCACAAGACGGAGTTATCGTAAAGGTGAGTTGCCCTATAGATGTTCATCCAATTTCAAAACTCATCCAATCATTCAAAGACGCCGAAATCAATATCCTTGAGTCAAAACTTAATGCTACAAATGACACCGTCTTTCACACATTCATAATTAAGTCCCAAAGTTCCGAGCAGCTGACAAAGGAGAAGTTGATCGCAGCATTTTCAAGAGAATCGAACTCCTTATAG 1884 0.4082 MKIEVGLGGSGLWNEDEKAMVVEVLGITAFDYLVTNSVSNENLLMAIGNSENLQNKLSDLVERSNVSNFSWNYAIFWQISQSKYGDWVLGWGDGCCREPKEEEEKENFGMKSFLSHNLVENEKQQRLRKRVLQKLHTTFGGSDEDNYAFGLDHVTDTEMFFLASMYFSFPNGHGGPGKCFASGKHLWLCDALKSNSSDYCVRSHLAKSVGFQTIVLVPTDLGVVELGSVRMVAESFELLQTIKSVFSSQSSLSRVNSISSLDEKRDENAPFSSLKVGEIIKNNNSYGNLHRHQNNDHGRVEGIGVPKIFGQDLNSATHFREKLAIRKMDERPSWGGRPNGNGISFPNGVHGSGWRGSQVLRQHVPADAFSPRPPSTSNAPELANGGGRHDFVLNNFQQQRKAQMQIDFSGATSRPSVRSIVGESELSDVEASCREDKPSPSDDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKQMESEREQFGSTSRDGSSSILPANPITENHQSRAPDMEIQAAQDGVIVKVSCPIDVHPISKLIQSFKDAEINILESKLNATNDTVFHTFIIKSQSSEQLTKEKLIAAFSRESNSL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00979 627 PANTHER MYC 39 619 IPR045084 GO:0003700|GO:0006355
Trre15g00979 627 SMART finulus 464 513 IPR011598 GO:0046983
Trre15g00979 627 FunFam Transcription factor bHLH13 451 525 - -
Trre15g00979 627 MobiDBLite consensus disorder prediction 366 389 - -
Trre15g00979 627 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 246 IPR025610 -
Trre15g00979 627 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 461 522 IPR036638 GO:0046983
Trre15g00979 627 Gene3D - 451 523 IPR036638 GO:0046983
Trre15g00979 627 Coils Coil 497 524 - -
Trre15g00979 627 MobiDBLite consensus disorder prediction 428 469 - -
Trre15g00979 627 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 458 507 IPR011598 GO:0046983
Trre15g00979 627 MobiDBLite consensus disorder prediction 407 469 - -
Trre15g00979 627 Pfam Helix-loop-helix DNA-binding domain 462 508 IPR011598 GO:0046983
Trre15g00979 627 CDD bHLH_AtAIB_like 455 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00979 Trre-Chr15 7678160 7680043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00979 9 623 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.377 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g00979 bHLH-MYC_N 6.5e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00979 - - gmx:100807078 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00979 15 7678160 7680043 Trre15g00979 15 7678160 7680043 ECH
Trre13g05378 13 58555748 58557460 Trre15g00979 15 7678160 7680043 PCT