Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00978 ATGGAGCAAAATTTGAAAGATGACGTGGCAGTAGAAACCGTTACGGCCGAGAATTCCGCCGAGAAAATCGGGAAAGTTCGTTGCGGCACAAGGCATCCAGTTTACCACGGTGTCCGGAAACGGCGGTGGGGAAAATGGGTATCGGAGATACGAGAGCCACGGAAGAAGTCACGAATATGGTTAGGATCTTTTCCGGCGCCGGAGATGGCGGCAAAAGCTTACGACGTTGCGGCGTATTGTTTGAAAGGACGTAAAGCTCAGCTTAATTTTCCTGATGAAGTTCACCGTCTTCCGTTGCTTCCTCCGCCGTCTTCGTGTACTGCTAAGGATATTCAAACGGCGGCGGCTGAAGCTGCTAATATGATGATGGTTAAGGATGTTGCATCGCCGGAGAATAGTAGCATTGGTTCTGGTGGTGGTGGTGATGATTTTTGGGGTGAGATTGAGTTACCGGAGCTTGTGAATGGAACCTGGTGGAGTTACTCTGTTGATGTTGCGGTGGTGCCGCCGGAGATTGAAATTCCGGCGCAGCAATCCTTCACGGCATGTCTCTAA 555 0.5063 MEQNLKDDVAVETVTAENSAEKIGKVRCGTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPLLPPPSSCTAKDIQTAAAEAANMMMVKDVASPENSSIGSGGGGDDFWGEIELPELVNGTWWSYSVDVAVVPPEIEIPAQQSFTACL 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00978 184 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Trre15g00978 184 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Trre15g00978 184 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Trre15g00978 184 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Trre15g00978 184 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Trre15g00978 184 CDD AP2 35 92 IPR001471 GO:0003700|GO:0006355
Trre15g00978 184 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Trre15g00978 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 129 - -
Trre15g00978 184 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Trre15g00978 184 SUPERFAMILY DNA-binding domain 34 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00978 Trre-Chr15 7650555 7651109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00978 30 184 AP2-EREBP Transcription Factor Family AT1G01250 61.111 1.13e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g00978 AP2 7.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00978 K09286 - gmx:100802845 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00978 15 7650555 7651109 Trre15g00978 15 7650555 7651109 ECH