Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00976 ATGGCACATCTGGAGTGTAATCTAAGGGCTCCAGAAACTTCTCGACAAGAAAAAGGTGAGCAAAATGATGGTCTTTATAAAGAGCTGTGGAAATTGTGCGCCGGACCGATGGTCAATGTTCCTGATACCGGTGAACAAATTCTTTACTTCCCACAAGGTCACATGGAACAACTGCAAGCATCAACTAATCAAGAATTCAACCAAGAAATTCCTCTTTTCAATCTGCCGTCACAGATTTTATGCCGTGTTGCTAACAATCATTTGCTGGCTGAGCAAGAAACTGATGAGGTTTATTCTTGTCTTTCTTTGATTCCAGATTCCGATGTAACTGAGCCTGTACTTCCTGATCTGAATCCTCCAGAGTCTCCAAAACCAAAGTTTCACTCGTTTTGCAAAATATTAACAGCTTCTGATACTAGCACACATGGAGGATTTTCTGTTTTGAGGAAGCATGCTACTGAGTGCTTGCCACCATTGGACATGACACAACCAACTCCAACTCAAGAGCTAGTAGCAAAAGATCTTCATGGAATTGAGTGGAAGTTTAAGCACATATATAGAGGCCAACCGAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTCGCCTCCAAAAGATTGGTGGCCGGAGATGCTTTTGTTTTCCTAAGGGGAGAGGACGGGCAAATGAGAGTTGGCGTTAGGCGTATGGCTAAGCAGCATACTCCTATGCCTTCATCTGTGATATCAAGCCATTCCATGCATCTCGGAATGCTTGCAACTGCTTCTCATGCTATCAAGAGTCGTACATTGTTTGTTGTTTATTACAAACCAAGGACTAGTCAGTTTATTGTTGGTTTGAACAAGTATTTGGAGGCTGTTAACAATTATAACTTTTCTGTTGGCATGAGATTCAAGATGAGGTTTGAAGGAGATGACTCACCTGAAAGAAGATTTTCTGGGACTATTGTTGGGGTTGGGGATTTATCTGCTGGATGGCCAAATTCTCACTGGAGATCACTGAAGGTTCAATGGGATGAGCCAGCAACAATTCCAAGACCAGATAGAGTTTCTGCATGGGAGATAGAACCTTTCACAGCTTCTCCTTCTTTGAATGTCACTCAACCATCAGTCAAGGGCAAAAGATCTCGGCCCGCCGATGTTTCACCTACTAGCTTTTGGTTTGCTGGATCGTCGTCTCAGGCTCCTAGACCGGCTGATGGCCCCACAACCAATCATGCCGTAGACGCAAACAAGAAAACCAACGCCCTAGATTGTTGGTTGTTTGGCGTCAACTTGACCAATAACAACAAATGTACCAACAATGTTAATCCTTGTTTAGACAAAGACCATGGATTTCCAAATTTAACCATTGCTTCTACTAGTGGTCCCAAGGAATCTATCCTTACAAGGGCATGTGAAACTGAAAAGGTCCAGAGTCCTAACAATTCATTGTCCACCAAAGGGCAGCTGCAGAAGAAAATTATTTGTGATGTATCACAAAATGAATGGCAGAACAAGCTGGCCACTGTACCATCCATGAGAACAAGGACTAAGGTGAAAATGCAAGGTGTAGCTGTTGGTAGAGCAATTGACTTAACCATGTTAAGTGGCTATGATGAACTCATTGATGAAGTTGAAAAATTATTTGATATTAAAGGAGAGCTACGTTCACAAAACAAATGGAGAGTTACTTTCACTGATAATGAAAATGACATGATGCTGGTTGGTGATGATCCATGGCCGGAATTTTGTAGCATTGTTAAAAAGATTTTCATCTGTTCGAAAGAGGCCTTAGAGAACATGAAATGCAAGTTACCTAACACTTCTTCATTAGAGATTGAACAGACACTGTTCAGCCTAGATTCACAAAATAGGAATGAGAATTAA 1872 0.4183 MAHLECNLRAPETSRQEKGEQNDGLYKELWKLCAGPMVNVPDTGEQILYFPQGHMEQLQASTNQEFNQEIPLFNLPSQILCRVANNHLLAEQETDEVYSCLSLIPDSDVTEPVLPDLNPPESPKPKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQPTPTQELVAKDLHGIEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEDGQMRVGVRRMAKQHTPMPSSVISSHSMHLGMLATASHAIKSRTLFVVYYKPRTSQFIVGLNKYLEAVNNYNFSVGMRFKMRFEGDDSPERRFSGTIVGVGDLSAGWPNSHWRSLKVQWDEPATIPRPDRVSAWEIEPFTASPSLNVTQPSVKGKRSRPADVSPTSFWFAGSSSQAPRPADGPTTNHAVDANKKTNALDCWLFGVNLTNNNKCTNNVNPCLDKDHGFPNLTIASTSGPKESILTRACETEKVQSPNNSLSTKGQLQKKIICDVSQNEWQNKLATVPSMRTRTKVKMQGVAVGRAIDLTMLSGYDELIDEVEKLFDIKGELRSQNKWRVTFTDNENDMMLVGDDPWPEFCSIVKKIFICSKEALENMKCKLPNTSSLEIEQTLFSLDSQNRNEN 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00976 623 SUPERFAMILY DNA-binding pseudobarrel domain 122 259 IPR015300 -
Trre15g00976 623 MobiDBLite consensus disorder prediction 391 410 - -
Trre15g00976 623 FunFam Auxin response factor 292 363 - -
Trre15g00976 623 SMART B3_2 130 232 IPR003340 GO:0003677
Trre15g00976 623 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Trre15g00976 623 FunFam Auxin response factor 504 597 - -
Trre15g00976 623 MobiDBLite consensus disorder prediction 1 21 - -
Trre15g00976 623 Pfam Auxin response factor 256 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre15g00976 623 CDD B3_DNA 128 230 IPR003340 GO:0003677
Trre15g00976 623 FunFam Auxin response factor 128 232 - -
Trre15g00976 623 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 597 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre15g00976 623 Gene3D - 292 364 - -
Trre15g00976 623 Gene3D - 505 597 - -
Trre15g00976 623 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Trre15g00976 623 SUPERFAMILY CAD & PB1 domains 504 585 - -
Trre15g00976 623 Pfam AUX/IAA family 506 545 IPR033389 -
Trre15g00976 623 Pfam AUX/IAA family 552 587 IPR033389 -
Trre15g00976 623 Gene3D - 127 231 IPR015300 -
Trre15g00976 623 ProSiteProfiles PB1 domain profile. 509 590 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00976 Trre-Chr15 7585884 7590003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00976 25 596 B3 DNA Binding Superfamily AT4G23980 56.209 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre15g00976 B3 1.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00976 K14486 - gmx:100790981 830.861